# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2e63A 170 1.903 2ii1A 301 1.960 2e2dC 180 3.661 b.40.3.1 131980 1txkA 498 4.382 b.1.18.2,b.30.5.9 107425,107426 1kjwA 295 5.991 b.34.2.1,c.37.1.1 68643,68644 2a4dA 160 6.335 d.20.1.1 126152 2jn9A 105 6.726 1iyeA 309 6.782 e.17.1.1 83786 2am1A 454 8.239 2r7gA 347 8.305 2dkoB 103 12.17 2fytA 340 15.39 c.66.1.6 134391 2hdeA 148 17.47 2e5aA 347 17.76 2d9rA 104 19.50 b.129.2.1 131350 1k2eA 156 20.31 d.113.1.1 72010 1lnsA 763 20.98 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 2hqxA 246 21.30 b.34.9.1 136675 2qqrA 118 21.96 1txlA 215 23.45 b.60.1.4 107429 2csuA 457 24.73 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2f1lA 187 24.86 b.41.1.4,b.43.3.4 132780,132781 1z4vA 532 26.39 2f4lA 297 26.70 b.23.3.1 132927 1evlA 401 27.73 c.51.1.1,d.104.1.1 33202,40751 2ov6A 101 27.83 2q8oA 136 28.99 1wueA 386 29.79 c.1.11.2,d.54.1.1 114892,114893 1br9 194 31.97 2yueA 168 32.16 2z0mA 337 33.06 1y9lA 115 35.25 1wu7A 434 36.10 c.51.1.1,d.104.1.1 121275,121276 2jixB 225 38.19 1ixkA 315 38.76 c.66.1.38 90716 1pyoB 105 40.57 1rlwA 126 40.67 b.7.1.1 23177 1jdc 429 43.61 1cfbA 205 44.85 b.1.2.1,b.1.2.1 21991,21992 2bkdN 134 45.53 2qv8A 159 46.13 1f3lA 321 46.89 c.66.1.6 59630 1h4vB 421 48.71 c.51.1.1,d.104.1.1 60624,60625 1j1nA 492 49.23 c.94.1.1 83978 1ka8A 100 51.13 a.4.5.20 72241 1wzvA 155 51.18 d.20.1.1 121529 1apyB 141 51.38 1nnvA 110 52.37 d.17.7.1 92012 1xovA 326 52.86 b.34.11.4,c.56.5.6 122206,122207 1d2eA 397 54.05 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1rkiA 102 54.65 d.308.1.2 118776 1xe7A 203 55.72 b.82.1.16 115213 1nbwA 607 57.86 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1pzgA 331 59.42 c.2.1.5,d.162.1.1 95425,95426 2nyuA 196 60.02 2oauA 306 60.89 b.38.1.3,d.58.43.1,f.34.1.1 138978,138979,138980 2ez6A 221 60.97 a.149.1.1,d.50.1.1 132616,132617 1qhoA 686 60.98 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 2f1cX 286 61.75 2gfaA 119 62.35 b.34.9.1,b.34.9.1 135089,135090 2ewdA 317 62.90 1wrvA 308 64.43 1byrA 155 64.55 d.136.1.1 41450 1iqqA 200 68.59 d.124.1.1 66274 2p9wA 334 68.65 2a1hA 365 68.74 e.17.1.1 125997 2j3wB 188 69.02 2b5hA 200 70.02 b.82.1.19 127894 2j12A 194 71.61 b.21.1.1 137932 2qztA 111 71.68 1q7eA 428 73.26 c.123.1.1 96035 2q1mA 130 73.35 2qdeA 397 74.89 1ni5A 433 75.42 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1iznB 277 77.98 e.43.1.2 83848 3d48R 211 78.47 2okuA 131 78.80 1xkiA 162 78.82 b.60.1.1 115408 1g87A 614 80.24 a.102.1.2,b.2.2.2 83275,83276 2vjqA 428 81.35 1ikpA 613 82.58 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1nmsA 249 82.93 c.17.1.1 85879 2cwrA 103 83.97 2v7bA 529 85.76 2cztA 167 86.50 2rc5A 314 86.63 1t0qA 498 86.81 a.25.1.2 106220 1usrA 454 86.98 b.68.1.1 99881 1lkeA 184 87.39 b.60.1.1 84622 1hfuA 503 87.45 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 2vsmA 416 87.78 2jz2A 66 89.43