# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 0.4474 b.34.9.1 84964 2bkdN 134 1.711 2qdeA 397 3.724 1rkiA 102 5.267 d.308.1.2 118776 2dkoB 103 5.984 2qqrA 118 6.854 2pc8A 400 8.077 2b5hA 200 10.39 b.82.1.19 127894 2atfA 200 10.71 b.82.1.19 127290 3b7yA 153 11.41 2f5kA 102 11.83 b.34.13.3 132995 2hqxA 246 11.83 b.34.9.1 136675 1or8A 340 12.51 c.66.1.6 93451 2jepA 395 12.96 2e63A 170 12.99 2gfaA 119 13.10 b.34.9.1,b.34.9.1 135089,135090 1nmeB 92 13.16 1qtnB 95 13.17 1khcA 147 13.36 b.34.9.2 68608 1jdcA 429 13.91 b.71.1.1,c.1.8.1 27789,28776 1sc3B 88 14.41 1n9bA 265 14.62 e.3.1.1 85463 1oihA 301 15.05 b.82.2.5 93051 2a4dA 160 15.91 d.20.1.1 126152 2eiyA 308 16.37 2geeA 203 16.70 1dqsA 393 16.84 e.22.1.1 43347 2pceA 386 16.97 2yzkA 178 17.65 2yueA 168 17.83 2d9rA 104 17.99 b.129.2.1 131350 1t3lA 337 19.18 b.34.2.1,c.37.1.1 106358,106359 1iznB 277 20.01 e.43.1.2 83848 1iysA 262 21.16 e.3.1.1 90723 1f3lA 321 21.32 c.66.1.6 59630 1hzoA 271 21.39 e.3.1.1 71092 2g3mA 693 21.76 1uwwA 191 21.92 b.18.1.23 108079 1ul7A 102 23.46 d.129.6.1 99540 2ii1A 301 23.50 1ok0A 74 23.81 b.5.1.1 93191 2jz2A 66 27.86 1c7sA 858 28.05 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 2ef5A 290 28.18 1ekfA 365 28.67 e.17.1.1 59445 2yvpA 182 28.97 2i49A 429 29.32 1t46A 313 29.97 d.144.1.7 106397 2jixB 225 29.99 1uwfA 158 30.93 b.2.3.2 119758 2qdxA 257 31.68 1xovA 326 31.95 b.34.11.4,c.56.5.6 122206,122207 2f1lA 187 32.11 b.41.1.4,b.43.3.4 132780,132781 1xnzA 264 32.27 d.127.1.1 115673 3b6nA 187 33.17 2qr6A 393 33.20 1jeyB 565 33.70 b.131.1.2,c.62.1.4 90372,90373 1bueA 265 33.75 e.3.1.1 42727 1xkiA 162 33.96 b.60.1.1 115408 2dscA 212 34.04 1jatB 138 34.36 d.20.1.1 62819 1z94A 147 34.74 d.129.3.5 124740 1tr7A 164 34.93 b.2.3.2 119328 1pyoB 105 35.03 2ccvA 101 35.39 b.154.1.1 130258 1c24A 263 35.66 d.127.1.1 41148 1a0qH 217 35.90 b.1.1.1,b.1.1.2 20287,21279 1ifrA 121 37.88 b.1.16.1 71203 1bkzA 135 38.15 b.29.1.3 24202 1hoe 74 38.77 2r7gA 347 38.88 1w5rA 278 42.74 d.3.1.5 120643 2z4tA 514 43.23 2fytA 340 43.96 c.66.1.6 134391 1wrvA 308 45.16 1xjvA 294 45.36 b.40.4.3,b.40.4.3 115396,115397 1gr3A 160 47.32 b.22.1.1 65476 2f1cX 286 47.57 1mi8A 158 47.71 b.86.1.2 91279 2occF 98 48.71 g.41.5.3 45256 1wgsA 133 49.24 b.34.13.3 114622 2jn9A 105 49.49 2bcfA 276 49.97 1ljoA 77 52.77 b.38.1.1 73941 3ct2A 382 53.41 1n2eA 300 53.89 c.26.1.4 85268 1y9lA 115 54.41 2cdpA 160 54.90 2iwvA 281 55.00 2du2A 374 56.06 2b0vA 153 56.85 d.113.1.1 127650 2h41A 95 57.99 1a0gA 282 58.05 e.17.1.1 43276 2hhiA 204 58.97 1es6A 296 59.09 b.31.1.1,b.31.1.1 83048,83049 1fdrA 248 59.65 b.43.4.2,c.25.1.1 25653,31543 1amx 180 60.57 2zhgA 154 61.70 1o91A 178 61.76 b.22.1.1 92656 2ogyA 262 62.26 3bpoC 314 62.95 2gz1A 366 63.70 c.2.1.3,d.81.1.1 135887,135888 1g6aA 271 64.89 e.3.1.1 42704 2q8kA 401 65.47 1d5yA 292 65.57 a.4.1.8,a.4.1.8,d.60.1.2 16055,16056,39532 1n08A 163 66.73 b.43.5.1 79730 2j12A 194 66.73 b.21.1.1 137932 1tjyA 316 66.96 c.93.1.1 107062 1xiyA 182 68.36 c.47.1.10 122022 3cswA 285 68.39 1kyqA 274 68.47 c.2.1.11,e.37.1.1 73281,73282 1huqA 164 68.80 c.37.1.8 32020 1ten 90 68.89 1wzvA 155 70.13 d.20.1.1 121529 1j1xH 114 70.32 b.1.1.1 77063 1bbpA 173 72.18 b.60.1.1 27147 3b3fA 341 73.53 1tenA 90 74.42 b.1.2.1 21990 2b8tA 223 74.81 c.37.1.24,g.39.1.14 128109,128110 2zdiC 151 75.01 1iyeA 309 75.47 e.17.1.1 83786 1ne8A 117 75.85 b.34.6.2 80424 2og5A 357 76.06 1d1nA 99 79.70 b.43.3.1 25718 1m1fA 110 79.97 b.34.6.2 78401 2afaA 425 81.95 a.102.1.3 126668 1j0fA 100 83.95 c.47.1.14 90739 1ngzB 220 84.72 b.1.1.1,b.1.1.2 80502,80503 2e2dC 180 85.56 b.40.3.1 131980 3cmsA 323 85.88 b.50.1.2 26865 1zeqX 84 86.04