# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 0.3008 b.34.9.1 84964 2qdeA 397 0.6365 2bkdN 134 1.702 1khcA 147 4.015 b.34.9.2 68608 2pceA 386 4.658 2dkoB 103 5.359 1sc3B 88 5.360 2yzkA 178 5.416 1nmeB 92 6.949 2jepA 395 6.992 1qtnB 95 7.425 1jdcA 429 7.620 b.71.1.1,c.1.8.1 27789,28776 3ct2A 382 7.628 2pc8A 400 8.078 1or8A 340 11.03 c.66.1.6 93451 2f5kA 102 11.92 b.34.13.3 132995 1w5rA 278 12.33 d.3.1.5 120643 2qqrA 118 12.77 1pyoB 105 13.31 2geeA 203 14.09 2hqxA 246 14.25 b.34.9.1 136675 1t3lA 337 16.05 b.34.2.1,c.37.1.1 106358,106359 2yueA 168 17.05 1ekfA 365 17.11 e.17.1.1 59445 1ul7A 102 18.68 d.129.6.1 99540 2e63A 170 19.64 2qdxA 257 19.64 1uwwA 191 20.69 b.18.1.23 108079 1xkiA 162 22.13 b.60.1.1 115408 1dqsA 393 22.27 e.22.1.1 43347 2eiyA 308 22.72 1a0qH 217 22.85 b.1.1.1,b.1.1.2 20287,21279 3b7yA 153 23.65 2gfaA 119 23.79 b.34.9.1,b.34.9.1 135089,135090 1f3lA 321 23.99 c.66.1.6 59630 1n9bA 265 24.32 e.3.1.1 85463 1rkiA 102 24.45 d.308.1.2 118776 1bquA 215 24.69 b.1.2.1,b.1.2.1 22066,22067 2z4tA 514 25.30 2atfA 200 25.89 b.82.1.19 127290 1z94A 147 27.91 d.129.3.5 124740 1ehsA 48 28.46 g.2.1.1 43998 2hhiA 204 28.51 1c7sA 858 28.97 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 2h41A 95 31.27 1jeyB 565 31.52 b.131.1.2,c.62.1.4 90372,90373 2jixB 225 32.18 2jn9A 105 33.95 2a4dA 160 35.26 d.20.1.1 126152 3bpoC 314 35.29 2iwvA 281 35.71 1iysA 262 36.65 e.3.1.1 90723 1sznA 417 38.19 b.71.1.1,c.1.8.1 106162,106163 1hzoA 271 39.31 e.3.1.1 71092 1oihA 301 39.73 b.82.2.5 93051 2b5hA 200 39.79 b.82.1.19 127894 1wgsA 133 39.86 b.34.13.3 114622 2qr6A 393 40.12 2inpA 494 40.33 1j0hA 588 40.45 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1yzbA 182 40.93 2e2dC 180 42.86 b.40.3.1 131980 1ngzB 220 44.13 b.1.1.1,b.1.1.2 80502,80503 2f1lA 187 44.41 b.41.1.4,b.43.3.4 132780,132781 2f1cX 286 45.48 1a9xA 1058 45.85 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1edgA 380 47.66 c.1.8.3 28807 2ccvA 101 48.19 b.154.1.1 130258 1d3yA 301 48.81 e.12.1.1 43252 2og5A 357 49.12 3cswA 285 50.13 1wrvA 308 50.56 1bkzA 135 50.72 b.29.1.3 24202 1gr3A 160 51.44 b.22.1.1 65476 1d1nA 99 51.48 b.43.3.1 25718 2d9rA 104 52.93 b.129.2.1 131350 1x89A 178 53.55 b.60.1.1 121799 1uwfA 158 54.35 b.2.3.2 119758 2i49A 429 54.71 1mi8A 158 55.34 b.86.1.2 91279 1tr7A 164 55.84 b.2.3.2 119328 1nxcA 478 58.40 a.102.2.1 92293 3b3fA 341 59.47 2ef5A 290 59.88 1fna 93 59.97 3b6nA 187 60.21 1wueA 386 60.62 c.1.11.2,d.54.1.1 114892,114893 1o91A 178 61.28 b.22.1.1 92656 2zhgA 154 61.73 1j0fA 100 61.97 c.47.1.14 90739 2fytA 340 62.66 c.66.1.6 134391 1xuvA 178 63.12 d.129.3.5 116069 2j12A 194 63.59 b.21.1.1 137932 2cdpA 160 66.40 1fdrA 248 66.86 b.43.4.2,c.25.1.1 25653,31543 1fhuA 320 67.64 c.1.11.2,d.54.1.1 29234,38878 2b8tA 223 67.92 c.37.1.24,g.39.1.14 128109,128110 1bbpA 173 69.01 b.60.1.1 27147 1tenA 90 69.35 b.1.2.1 21990 2occF 98 69.46 g.41.5.3 45256 1tjyA 316 69.98 c.93.1.1 107062 2b5iB 214 70.58 b.1.2.1,b.1.2.1 127896,127897 2oqyA 391 70.69 1bheA 376 70.94 b.80.1.3 28030 1t46A 313 71.59 d.144.1.7 106397 1ten 90 71.65 1p5hA 428 71.66 c.123.1.1 87802 2ze0A 555 71.82 1f6fB 210 71.82 b.1.2.1,b.1.2.1 22033,22034 1a0gA 282 73.60 e.17.1.1 43276 2b0vA 153 74.23 d.113.1.1 127650 2dscA 212 74.26 1kyqA 274 75.35 c.2.1.11,e.37.1.1 73281,73282 1vc3B 97 75.46 1bag 425 75.74 1bueA 265 76.03 e.3.1.1 42727 2r7gA 347 79.67 1mucA 373 80.80 c.1.11.2,d.54.1.1 29236,38880 2vjqA 428 81.15 2ptfA 233 81.17 1jixA 351 84.40 c.87.1.1 63081 2biwA 490 84.59 1dqqB 210 85.01 b.1.1.1,b.1.1.2 20421,21391 1tr8A 102 87.10 1i4uA 181 88.07 b.60.1.1 61732 2zaiA 497 89.53 2zdiC 151 89.67