# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mhnA 59 0.2896 b.34.9.1 84964 2qdeA 397 0.7582 2jepA 395 1.482 2bkdN 134 1.735 1ul7A 102 3.181 d.129.6.1 99540 1khcA 147 3.701 b.34.9.2 68608 2pc8A 400 6.853 1dqsA 393 7.078 e.22.1.1 43347 2yzkA 178 7.920 2pceA 386 7.982 3ct2A 382 9.585 2hqxA 246 9.779 b.34.9.1 136675 1sznA 417 10.32 b.71.1.1,c.1.8.1 106162,106163 1ekfA 365 10.67 e.17.1.1 59445 2eiyA 308 11.52 2qqrA 118 11.67 2geeA 203 12.20 1sc3B 88 12.84 2z4tA 514 13.38 1or8A 340 13.62 c.66.1.6 93451 2dkoB 103 14.01 1jdcA 429 14.45 b.71.1.1,c.1.8.1 27789,28776 1t3lA 337 14.96 b.34.2.1,c.37.1.1 106358,106359 1nmeB 92 15.16 2yueA 168 16.10 1qtnB 95 16.30 2inpA 494 16.89 1uwwA 191 18.01 b.18.1.23 108079 1w5rA 278 18.11 d.3.1.5 120643 1n9bA 265 18.22 e.3.1.1 85463 3bpoC 314 19.11 2e63A 170 19.38 1iysA 262 19.97 e.3.1.1 90723 2qdxA 257 20.61 1rkiA 102 20.91 d.308.1.2 118776 3b7yA 153 21.74 1hzoA 271 22.22 e.3.1.1 71092 2atfA 200 22.31 b.82.1.19 127290 1edgA 380 22.57 c.1.8.3 28807 2f5kA 102 24.69 b.34.13.3 132995 1jeyB 565 24.78 b.131.1.2,c.62.1.4 90372,90373 2b5hA 200 24.94 b.82.1.19 127894 2gfaA 119 25.30 b.34.9.1,b.34.9.1 135089,135090 1wrvA 308 25.82 1bquA 215 26.02 b.1.2.1,b.1.2.1 22066,22067 3c5iA 369 26.95 1a0qH 217 27.13 b.1.1.1,b.1.1.2 20287,21279 1c7sA 858 27.30 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 2g3mA 693 27.36 1f3lA 321 28.02 c.66.1.6 59630 2ef5A 290 29.22 1oihA 301 29.33 b.82.2.5 93051 1mi8A 158 31.99 b.86.1.2 91279 1wgsA 133 33.72 b.34.13.3 114622 1uasA 362 33.95 b.71.1.1,c.1.8.1 88388,88389 1d3yA 301 34.27 e.12.1.1 43252 2jixB 225 34.59 1bkzA 135 34.66 b.29.1.3 24202 2d9rA 104 34.96 b.129.2.1 131350 2b0vA 153 35.25 d.113.1.1 127650 1pyoB 105 35.38 2h41A 95 37.73 2og5A 357 38.91 1yzbA 182 39.85 2b5iB 214 39.99 b.1.2.1,b.1.2.1 127896,127897 1gr3A 160 40.87 b.22.1.1 65476 1z94A 147 42.50 d.129.3.5 124740 2f1lA 187 43.53 b.41.1.4,b.43.3.4 132780,132781 2a4dA 160 45.45 d.20.1.1 126152 2hhiA 204 46.04 1wueA 386 46.88 c.1.11.2,d.54.1.1 114892,114893 3cswA 285 48.86 2a1hA 365 49.71 e.17.1.1 125997 1a0gA 282 50.86 e.17.1.1 43276 1o91A 178 51.10 b.22.1.1 92656 2j12A 194 51.76 b.21.1.1 137932 1bueA 265 53.90 e.3.1.1 42727 1fna 93 53.92 2zhgA 154 54.37 2ccvA 101 54.70 b.154.1.1 130258 2occF 98 55.09 g.41.5.3 45256 1g6aA 271 55.49 e.3.1.1 42704 3b3fA 341 56.02 2agaA 190 56.09 1j0hA 588 56.87 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2qr6A 393 57.12 1ten 90 59.53 1tenA 90 59.65 b.1.2.1 21990 1f6fB 210 59.98 b.1.2.1,b.1.2.1 22033,22034 1t46A 313 60.33 d.144.1.7 106397 1xkiA 162 60.76 b.60.1.1 115408 1ehsA 48 61.16 g.2.1.1 43998 2i49A 429 61.93 2q8kA 401 62.04 2e2dC 180 62.61 b.40.3.1 131980 2iwvA 281 62.78 1j7lA 264 65.65 d.144.1.6 62697 1d1nA 99 67.49 b.43.3.1 25718 1bbpA 173 68.08 b.60.1.1 27147 1nwbA 124 69.06 b.124.1.1 86296 2fytA 340 70.39 c.66.1.6 134391 1x89A 178 70.65 b.60.1.1 121799 3b6nA 187 72.49 2jn9A 105 72.88 1iyeA 309 74.99 e.17.1.1 83786 1kyqA 274 75.34 c.2.1.11,e.37.1.1 73281,73282 2hlyA 207 75.84 1c24A 263 76.53 d.127.1.1 41148 2yvpA 182 77.44 1ifrA 121 77.74 b.1.16.1 71203 2zdiC 151 78.05 1cq3A 233 78.51 b.27.1.1 23923 2du2A 374 80.46 2oqyA 391 80.82 1o7iA 119 81.60 b.40.4.3 86642 1bheA 376 84.11 b.80.1.3 28030 2baaA 243 84.63 d.2.1.1 36243 1fdrA 248 85.43 b.43.4.2,c.25.1.1 25653,31543 1l1qA 186 87.49 c.61.1.1 77653 2ptfA 233 87.82 1zsyA 357 87.95 2j2jA 197 89.11 3buvA 326 89.37