# List of top-scoring protein chains for T0429.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2e6sA	77	0.1964		
2jwhA	48	12.35		
1y8qB	640	13.40		
1rrqA	369	17.22	a.96.1.2,d.113.1.3	97798,97799
2ctuA	73	35.43		
1dqaA	467	35.47	d.58.20.1,d.179.1.1	39364,42585
2r4fA	441	38.30		
1oikA	301	39.28	b.82.2.5	93063
1oihA	301	39.75	b.82.2.5	93051
1rrsA	369	40.90	a.96.1.2,d.113.1.3	97800,97801
2z5tM	140	41.44		
2nslA	169	45.21		
1oijC	301	49.54	b.82.2.5	93061
2nmuA	156	49.66	d.290.1.3	138379
2nshA	169	49.82		
1qczA	169	50.06	c.23.8.1	31276
2hx0A	154	50.12	d.290.1.3	136830
2pvbA	107	52.97	a.39.1.4	17205
1wq5A	268	54.98	c.1.2.4	121163
2z5sM	140	55.66		
1d7aA	161	57.77	c.23.8.1	31277
2enzA	65	64.72		
1zueA	42	70.45	g.9.1.1	125670
1d6bA	42	70.67	g.9.1.1	44594
3bqdA	255	74.16		
1m2zA	257	74.37	a.123.1.1	84768
2i76A	276	74.78		
2yucA	76	77.22		
1nhzA	280	79.31	a.123.1.1	85727
1beuA	268	87.42	c.1.2.4	28574
1kfbA	268	87.74	c.1.2.4	77369
1tjpA	268	87.96	c.1.2.4	119290
1kfcA	268	88.17	c.1.2.4	77371
1qopA	268	88.39	c.1.2.4	28570