# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ts9A	102	2.657	b.137.1.1	112618
1rnfA	120	4.700	d.5.1.1	37291
1q7eA	428	5.147	c.123.1.1	96035
1vk6A	269	6.389	d.113.1.4,d.113.1.4,g.41.14.1	100852,111609,111610
2affA	120	7.221	b.26.1.2	126678
1ycrA	109	9.98	a.42.1.1	17420
1agiA	125	12.72	d.5.1.1	37303
2nwaA	88	15.53		
1rkiA	102	15.83	d.308.1.2	118776
1lt5D	103	16.61	b.40.2.1	24875
1pt7A	437	17.49	c.123.1.1	95093
1ycqA	107	17.91	a.42.1.1	17419
1zvfA	176	18.36		
2igbA	179	22.17		
1oboA	169	22.51	c.23.5.1	86776
1gxcA	149	24.83	b.26.1.2	70687
1ip9A	85	26.63	d.15.2.2	62638
1q46A	175	27.17	a.60.14.1,b.40.4.5	111594,111595
1p5hA	428	30.11	c.123.1.1	87802
2r31A	239	31.38		
1zxfA	155	36.01	d.129.3.5	125771
2cy3A	118	36.44	a.138.1.1	19649
1wmvA	54	38.31		
1pdqA	72	38.68	b.34.13.2	94590
2i74A	189	39.06	b.18.1.29	137100
2arhA	203	39.60	d.108.1.9	127197
2jn9A	105	47.65		
1upqA	123	49.31	b.55.1.1	113392
1dwmA	70	50.74	d.40.1.1	38583
2pbtA	134	52.26		
1ukkA	142	55.83	d.227.1.1	99491
1qvaA	223	56.69	c.37.1.19	32411
2o1cA	150	57.96		
2furA	209	58.92	b.45.1.1	134185
1f4pA	147	61.71	c.23.5.1	59651
1gvpA	87	62.84	b.40.4.7	25369
2oqpA	134	65.96		
2v0uA	146	67.44		
1wwtA	88	70.56		
1py0A	125	70.96	b.6.1.1	111645
1u9tA	354	72.45	e.62.1.1	119651
1ul7A	102	74.23	d.129.6.1	99540
2gauA	232	78.58	a.4.5.4,b.82.3.2	134894,134895
1pfzA	380	79.27	b.50.1.2	26881
5nulA	138	80.57	c.23.5.1	31191
1jnuA	104	80.98	d.110.3.6	71762
1rcf	169	81.33		
2govA	195	81.44	d.60.1.4	135447
1t4fM	110	81.57	a.42.1.1	119144
1x74A	360	83.41	c.123.1.1	121771
1qs8A	329	83.95	b.50.1.2	26887
2vjqA	428	85.24		
2e7pA	116	85.76		
1wiiA	85	86.03	g.41.3.4	114673
1bu5A	147	86.14	c.23.5.1	31155
1wj9A	211	89.40	d.58.53.1,d.58.53.1	114694,114695