# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rnfA	120	5.372	d.5.1.1	37291
1ts9A	102	6.351	b.137.1.1	112618
2affA	120	10.22	b.26.1.2	126678
1agiA	125	10.63	d.5.1.1	37303
1q7eA	428	16.15	c.123.1.1	96035
2jn9A	105	19.38		
1lt5D	103	19.61	b.40.2.1	24875
1zvfA	176	20.99		
1q46A	175	21.15	a.60.14.1,b.40.4.5	111594,111595
2oqpA	134	22.01		
1rkiA	102	22.17	d.308.1.2	118776
1zxfA	155	26.49	d.129.3.5	125771
1twfI	122	30.56	g.41.3.1,g.41.3.1	112733,112734
1wwtA	88	32.52		
1wakA	397	36.39		
1ycrA	109	36.66	a.42.1.1	17420
3cyr	107	36.91		
2yu1A	451	44.53		
1f4pA	147	44.81	c.23.5.1	59651
1xk7A	408	45.50	c.123.1.1	122071
1gxcA	149	46.49	b.26.1.2	70687
2cy3A	118	49.63	a.138.1.1	19649
1qjkA	36	52.12	g.46.1.1	45345
1pt7A	437	52.32	c.123.1.1	95093
1d6bA	42	54.54	g.9.1.1	44594
1ycqA	107	55.48	a.42.1.1	17419
1bu5A	147	55.79	c.23.5.1	31155
1xa3A	437	57.87	c.123.1.1	115025
1ip9A	85	60.63	d.15.2.2	62638
2nujA	163	61.70	d.38.1.1	138608
2v0uA	146	62.43		
2uwnA	187	63.60		
1wmvA	54	64.51		
1oz2A	331	67.25	b.34.9.3,b.34.9.3,b.34.9.3	93781,93782,93783
1py0A	125	71.43	b.6.1.1	111645
1rcuA	195	72.40	c.129.1.1	97295
1pvzA	31	72.95	g.3.7.2	104333
1wiiA	85	74.30	g.41.3.4	114673
2arhA	203	76.29	d.108.1.9	127197
1upqA	123	76.50	b.55.1.1	113392
2qjtA	352	77.26		
1miqA	375	77.34	b.50.1.2	79151
1yyqA	374	77.46		
1j9eA	147	79.45	c.23.5.1	62756
2igbA	179	79.80		
1k59A	123	80.23	d.5.1.1	72073
2i74A	189	80.83	b.18.1.29	137100
2jwhA	48	82.74		
1p5hA	428	88.15	c.123.1.1	87802
1s95A	333	88.97	d.159.1.3	105375