# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rnfA	120	9.684	d.5.1.1	37291
1ts9A	102	11.02	b.137.1.1	112618
1lt5D	103	15.59	b.40.2.1	24875
2yu1A	451	17.30		
1ycrA	109	19.87	a.42.1.1	17420
1rkiA	102	21.46	d.308.1.2	118776
1q7eA	428	23.75	c.123.1.1	96035
1agiA	125	24.15	d.5.1.1	37303
2affA	120	27.14	b.26.1.2	126678
1q46A	175	28.05	a.60.14.1,b.40.4.5	111594,111595
1zvfA	176	28.68		
1wmvA	54	31.90		
1ycqA	107	33.22	a.42.1.1	17419
1zxfA	155	37.85	d.129.3.5	125771
1ip9A	85	41.46	d.15.2.2	62638
2oqpA	134	43.47		
2qjtA	352	51.48		
1oboA	169	52.91	c.23.5.1	86776
1qjkA	36	54.76	g.46.1.1	45345
2o1cA	150	60.23		
1rcuA	195	62.80	c.129.1.1	97295
2nwaA	88	63.55		
1bu5A	147	67.53	c.23.5.1	31155
1f4pA	147	68.01	c.23.5.1	59651
1d6bA	42	69.25	g.9.1.1	44594
2uwnA	187	69.71		
1dwmA	70	69.78	d.40.1.1	38583
3b8zA	217	75.69		
5nulA	138	76.69	c.23.5.1	31191
1pt7A	437	78.12	c.123.1.1	95093
1wiiA	85	79.52	g.41.3.4	114673
2go2A	163	89.29