# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zxuA	217	2.519	d.23.1.2	125796
2imgA	151	5.637		
2ov6A	101	6.887		
2gxaA	274	7.245		
1th8A	145	7.318	d.122.1.3	106908
2b4yA	271	10.13	c.31.1.5	127868
2f5vA	595	12.65	c.3.1.2,d.16.1.1	133010,133011
1wrmA	165	12.95		
2ov0A	105	14.53		
2hxpA	155	15.27		
1zzwA	149	15.74		
1yz4A	160	16.66		
1ptq	50	17.28		
2e0tA	151	20.79		
2i6jA	161	21.11		
1ptqA	50	22.49	g.49.1.1	45349
1viuA	203	23.35	d.113.1.1	100771
2pndA	119	23.38		
1rxdA	159	24.52	c.45.1.1	111959
2nt2A	145	24.90		
1gd1O	334	24.92	c.2.1.3,d.81.1.1	29962,39877
2cveA	191	34.11	d.14.1.11,d.58.11.2	130869,130870
2gw4B	162	36.92		
1bqkA	124	37.52	b.6.1.1	22889
2ex4A	241	39.04	c.66.1.42	132516
1id0A	152	42.22	d.122.1.3	66111
2p4dA	172	42.70		
2esbA	188	42.87		
1xmzA	241	46.00		
2ajtA	500	47.37	b.43.2.2,c.85.1.2	126894,126895
1vhrA	184	50.26	c.45.1.1	32651
1njgA	250	51.45	c.37.1.20	85785
2b9uA	176	51.96		
1llaA	628	52.04	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
1oktA	211	52.35	a.45.1.1,c.47.1.5	93272,93273
2i5tA	188	53.59		
1wkaA	147	55.41	b.51.1.1	120978
2hcmA	164	58.78		
2f4dA	184	59.85		
2ahrA	259	61.67	a.100.1.10,c.2.1.6	126775,126776
2i46A	161	63.38		
1udzA	182	66.95	b.51.1.1	99239
2a46A	238	68.10		
1y7bA	542	70.35	b.29.1.23,b.67.2.1	122687,122688
1y5iB	512	72.04	d.58.1.5	122641
1az6A	36	72.15	g.3.8.1	44184
2ib5A	233	72.42		
1fpzA	212	74.12	c.45.1.1	59976
2vadA	223	74.94		
1i9sA	210	74.96	c.45.1.1	62099
1wnyA	186	76.35		
1p77A	272	76.68	c.2.1.7,c.58.1.5	94214,94215
1yn9A	169	78.82		
2idqA	105	80.16		
2r0bA	154	82.64		
1ps1A	337	83.43	a.128.1.4	19450
1yxaA	398	83.54		
2i4rA	102	83.84		
2ajgA	196	84.59		
1sfdA	105	87.06	b.6.1.1	105480