# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2odpA 509 0.2899 2i6qA 517 0.8794 1o7dE 126 2.074 2qsxA 218 4.410 1eq9A 222 4.425 b.47.1.2 26068 1gvzA 237 4.459 b.47.1.2 76360 2rh0A 157 5.793 3beuA 224 6.087 1ao5A 237 6.233 b.47.1.2 26334 1rm6B 324 7.942 d.87.2.1,d.145.1.3 111874,111875 1zjkA 403 8.309 b.47.1.2,g.18.1.1,g.18.1.1 125149,125150,125151 2ex4A 241 8.949 c.66.1.42 132516 1n62C 288 9.691 d.87.2.1,d.145.1.3 80094,80095 2bs2B 241 15.19 a.1.2.1,d.15.4.2 129033,129034 1m9uA 241 16.43 b.47.1.2 74601 3b9jB 350 18.32 2arzA 247 18.71 b.45.1.1 127225 2oq5A 232 19.07 1y8cA 246 19.89 c.66.1.43 116563 2pndA 119 19.93 1z8gA 372 20.76 b.47.1.2,d.170.1.2 124697,124698 1nbcA 155 20.90 b.2.2.2 22390 1uurA 473 26.44 a.47.1.1,b.2.5.5,d.93.1.1 100016,100017,100018 1jofA 365 27.81 b.69.10.1 71775 2ed6A 170 27.83 2c4xA 260 28.41 2hlcA 230 28.45 b.47.1.2 26074 1y7mA 164 34.21 b.160.1.1,d.7.1.1 122696,122697 2d3vA 196 35.03 2vdxA 373 37.12 1ko7A 314 37.34 c.98.2.1,c.91.1.2 72797,72798 2yzcA 302 37.91 1h8dH 260 38.58 1jyhA 157 38.87 d.60.1.3 71956 2qxiA 224 39.61 1spjA 238 40.17 2r9pA 224 41.83 2hq9A 149 42.94 b.45.1.1 136659 2bdgA 223 43.49 1r6jA 82 43.93 b.36.1.1 97151 1sq2N 113 45.53 b.1.1.1 105881 1yrkA 126 47.10 2ntkA 222 47.74 d.153.2.1 138583 1flmA 122 48.27 b.45.1.1 25747 1fiqB 350 50.35 d.87.2.1,d.145.1.3 40229,41760 2aiqA 231 51.30 1vkyA 347 55.32 e.53.1.1 108696 2hxrA 238 55.39 1sr9A 644 55.71 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 2dnjA 260 55.99 d.151.1.1 41790 2fdiA 211 56.27 b.82.2.10 133311 2g3wA 182 56.97 2jz2A 66 56.99 2uv3A 126 57.23 2raqA 97 57.28 1k4zA 159 57.39 b.80.5.1 72070 16pkA 415 57.85 c.86.1.1 35454 3cp3A 148 57.91 2bvrH 252 58.10 1a0jA 223 61.12 b.47.1.2 26002 1hj9A 226 65.94 b.47.1.2 65845 1knxA 312 66.39 c.98.2.1,c.91.1.2 77459,77460 2o0aA 298 67.65 1vhvA 268 68.15 c.90.1.1 100704 1yb2A 275 69.84 c.66.1.13 122868 1kuuA 202 70.48 d.153.2.1 73019 2v78A 313 72.55 2pwyA 258 72.76 2a31A 223 73.95 b.47.1.2 126068 1v97A 1332 74.11 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 1e5pA 151 75.79 b.60.1.1 59272 2b9lA 394 76.26 1dpoA 223 76.58 b.47.1.2 25975 1d7pM 159 79.15 b.18.1.2 23718 3d2lA 243 79.19 2q9kA 151 80.15 1x89A 178 80.95 b.60.1.1 121799 1kexA 155 81.32 b.18.1.2 77350 2h98A 313 82.07 1wb0A 445 83.73 c.1.8.5,d.26.3.1 120825,120826 2eaqA 90 84.12 1f7zA 233 86.34 b.47.1.2 59681 2fz0A 149 86.82 1neuA 124 87.28 b.1.1.1 19704 1tueB 218 87.95 b.91.1.1 107324 3bgaA 1010 88.22