# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2r6oA	294	3.561		
2esbA	188	10.20		
2hxpA	155	10.80		
1yz4A	160	12.17		
1xtpA	254	13.48	c.66.1.42	116031
2e0tA	151	14.96		
2d9rA	104	16.21	b.129.2.1	131350
2hcmA	164	16.39		
1zxuA	217	17.88	d.23.1.2	125796
1q7eA	428	18.63	c.123.1.1	96035
2r0bA	154	19.00		
1zzwA	149	21.51		
1l0sA	90	23.24	b.81.2.1	73408
1fpzA	212	23.49	c.45.1.1	59976
2f4dA	184	23.99		
2nt2A	145	24.29		
1wrmA	165	25.24		
1p5hA	428	25.59	c.123.1.1	87802
1pt7A	437	27.84	c.123.1.1	95093
1ptqA	50	28.71	g.49.1.1	45349
2ov6A	101	30.03		
2r85A	334	30.51		
2imgA	151	30.52		
2cjaA	522	30.59		
1vhrA	184	33.28	c.45.1.1	32651
1g7fA	298	33.41	c.45.1.2	60330
1i9sA	210	38.39	c.45.1.1	62099
1pa1A	310	39.76	c.45.1.2	94404
2i46A	161	40.23		
1ptq	50	40.50		
1zckA	154	42.25		
2ov0A	105	49.30		
1rlzA	369	50.31	c.31.1.1	104989
2p4dA	172	51.65		
2yx0A	342	52.63		
2i6jA	161	52.93		
1o22A	170	58.12	d.238.1.1	86557
1lyvA	306	58.34	c.45.1.2	74348
1yxyA	234	59.64	c.1.2.5	124203
1whtB	153	60.02		
2ib5A	233	61.55		
1bkzA	135	61.57	b.29.1.3	24202
2zhgA	154	62.70		
1whsB	153	63.24		
1f28A	297	66.69	d.117.1.1	59608
1zuxA	224	66.94		
3cryA	188	70.59		
1dhs	344	70.86		
2cujA	108	72.05	a.4.1.18	130812
2qtxA	71	78.29		
1hvyA	288	82.07	d.117.1.1	41049
2idqA	105	83.65		
1alyA	146	88.46	b.22.1.1	23856