# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2cjaA	522	2.803		
1rkbA	173	11.63	c.37.1.1	111854
1tm9A	137	12.96	a.225.1.1	107150
1xtpA	254	14.17	c.66.1.42	116031
2jn9A	105	29.20		
2ov0A	105	31.78		
2ov6A	101	38.56		
1f28A	297	39.96	d.117.1.1	59608
1zxuA	217	41.66	d.23.1.2	125796
2dhoA	235	43.07		
1tif	78	46.81		
2r6zA	258	48.86		
1y0hA	105	50.11	d.58.4.11	116303
1oxdA	227	50.66	d.22.1.1	93687
2j5cA	569	53.04		
1sznA	417	56.48	b.71.1.1,c.1.8.1	106162,106163
1zckA	154	56.78		
2i4rA	102	57.24		
2gbaA	105	57.98		
1bxaA	105	61.07	b.6.1.1	22839
2d9rA	104	61.55	b.129.2.1	131350
2qtxA	71	62.80		
1ptq	50	63.55		
1hvyA	288	64.30	d.117.1.1	41049
1tifA	78	64.53	d.15.8.1	37836
2eaqA	90	65.02		
2idqA	105	66.93		
1w2qA	127	67.35		
1pujA	282	69.29	c.37.1.8	88294
2iyvA	184	69.85	c.37.1.2	137812
1bkzA	135	76.46	b.29.1.3	24202
1v5pA	126	76.67	b.55.1.1	108382
2e0tA	151	77.91		
1bkpA	278	78.18	d.117.1.1	41029
2hxpA	155	78.97		
1xa3A	437	80.80	c.123.1.1	115025
2sakA	121	82.98	d.15.5.1	37711
2qaiA	111	86.16		
1th8A	145	86.41	d.122.1.3	106908
3bp1A	290	86.70		
1ypvA	313	87.77