# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2i6qA	517	1.906		
1rrpB	134	2.718	b.55.1.3	26995
2odpA	509	3.864		
2z14A	133	4.140		
2ntkA	222	4.466	d.153.2.1	138583
1xtpA	254	6.981	c.66.1.42	116031
1kuuA	202	8.270	d.153.2.1	73019
2bs2B	241	10.30	a.1.2.1,d.15.4.2	129033,129034
1na6A	404	17.21	b.142.1.1,c.52.1.22	91748,91749
2jz2A	66	18.56		
1sr9A	644	19.25	a.5.7.1,c.1.10.5,d.270.1.1	105960,105961,105962
1f97A	212	19.73	b.1.1.1,b.1.1.4	19763,21764
2gsmB	262	20.64	b.6.1.2,f.17.2.1	135590,135591
1u5dA	108	21.35	b.55.1.1	119536
1jofA	365	21.54	b.69.10.1	71775
2qj2A	184	23.41		
2fo3A	125	23.61	d.20.1.1	133868
1uf5A	303	26.21	d.160.1.2	107808
1o7dE	126	29.17		
1y7mA	164	31.49	b.160.1.1,d.7.1.1	122696,122697
2e27L	119	32.72		
1pz7A	204	32.74	b.29.1.4	95405
2d7tL	116	34.07		
1xjvA	294	35.25	b.40.4.3,b.40.4.3	115396,115397
1mvuA	114	37.00	b.1.1.1	91474
2ex4A	241	37.09	c.66.1.42	132516
1c28A	135	37.84	b.22.1.1	23857
1fiqB	350	39.00	d.87.2.1,d.145.1.3	40229,41760
1eeqA	114	40.04	b.1.1.1	20544
2cxvA	219	40.83	b.47.1.4	131012
3b9jB	350	43.68		
3d2lA	243	43.82		
3cegA	323	45.36		
2eaqA	90	46.49		
2nyiA	195	46.71		
1wb0A	445	46.80	c.1.8.5,d.26.3.1	120825,120826
1d7pM	159	50.10	b.18.1.2	23718
1erzA	303	50.40	d.160.1.2	59498
1ko7A	314	51.53	c.98.2.1,c.91.1.2	72797,72798
1y8cA	246	52.13	c.66.1.43	116563
2rheA	114	54.63	b.1.1.1	20523
2z84A	218	55.97		
1npuA	117	56.70	b.1.1.1	92038
1iueA	98	57.76	d.15.4.1	90697
1k4zA	159	59.56	b.80.5.1	72070
1r6jA	82	60.07	b.36.1.1	97151
2j59M	168	60.52		
1rm6B	324	61.39	d.87.2.1,d.145.1.3	111874,111875
1zxq	192	61.39		
1zi0A	307	62.89		
1sacA	204	63.21	b.29.1.5	24237
1dykA	394	66.40	b.29.1.4,b.29.1.4	24223,24224
3cddA	361	67.12		
1nrjA	158	69.16	d.110.4.4	86124
2rh0A	157	69.86		
1frdA	98	71.72	d.15.4.1	37648
1j8mF	297	72.23	a.24.13.1,c.37.1.10	62742,62743
1hv9A	456	73.20	b.81.1.4,c.68.1.5	28060,34518
1vf8A	377	75.24	c.1.8.5,d.26.3.1	120029,120030
1zvtA	256	75.94		
2yz1A	120	76.07		
1zpvA	91	76.91	d.58.18.7	125475
1btn	106	77.67		
1n62C	288	79.00	d.87.2.1,d.145.1.3	80094,80095
2vqeD	209	79.40		
1knxA	312	79.97	c.98.2.1,c.91.1.2	77459,77460
2v0hA	456	80.90		
2zivA	311	81.39		
1zoyB	252	83.18		
1k5dB	201	85.24	b.55.1.3	68169
1mqkL	120	86.46	b.1.1.1	85054
1a2yB	116	86.82	b.1.1.1	19927
2r2aA	199	88.13		
1mfaH	120	88.90	b.1.1.1	19889