# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hr6B 443 7.64e-41 d.185.1.1,d.185.1.1 61166,61167 1qcrA 446 1.53e-39 d.185.1.1,d.185.1.1 59025,59026 1hr6A 475 1.93e-39 d.185.1.1,d.185.1.1 61164,61165 1ppjB 439 9.04e-39 d.185.1.1,d.185.1.1 104254,104255 3cx5A 431 1.05e-38 1ppjA 446 1.08e-38 d.185.1.1,d.185.1.1 104252,104253 1kb9A 431 1.36e-37 d.185.1.1,d.185.1.1 77311,77312 1ezvA 430 1.62e-37 d.185.1.1,d.185.1.1 59541,59542 1q2lA 939 1.57e-34 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2g47A 990 4.90e-33 3cx5B 352 3.14e-31 1kb9B 352 6.27e-30 d.185.1.1,d.185.1.1 77313,77314 2fgeA 995 1.16e-28 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1ezvB 352 4.21e-28 d.185.1.1,d.185.1.1 59543,59544 1c7nA 399 13.59 c.67.1.3 34413 1zzkA 82 21.76 d.51.1.1 125909 1gdeA 389 26.04 c.67.1.1 60456 2qcoA 210 28.87 1qqcA 773 31.31 c.55.3.5,e.8.1.1 33724,43013 2dpoA 319 31.72 2z20A 432 33.53 1f0yA 302 34.22 a.100.1.3,c.2.1.6 18793,30197 1fe0A 68 37.27 d.58.17.1 39345 1tq4A 413 40.58 c.37.1.8 107201 1j5kA 89 42.97 d.51.1.1 71565 1qupA 222 46.54 b.1.8.1,d.58.17.1 22301,39352 1tyhA 248 46.97 a.132.1.3 107458 2qfjA 216 52.84 1svsA 353 52.90 c.37.1.8 106051 1dpeA 507 56.02 c.94.1.1 35799 1v96A 149 57.25 c.120.1.1 119877 1zcaA 359 59.56 a.66.1.1,c.37.1.8 124897,124898 2yviA 111 59.85 2nogA 173 60.11 1xi9A 406 60.75 c.67.1.1 115355 2hdhA 293 61.18 a.100.1.3,c.2.1.6 18795,30199 1a6i 217 61.39 1zd0A 150 64.61 d.329.1.1 124927 2i1oA 398 65.99 2ge7A 108 66.02 d.254.1.2 135049 1k3eA 156 74.53 d.198.1.1 68103 1zcbA 362 76.32 a.66.1.1,c.37.1.8 124901,124902 1bifA 469 78.77 c.37.1.7,c.60.1.4 31961,34003 2v75A 104 84.22 2im5A 394 88.36 2dobA 83 89.48 1ryiA 382 89.76 c.3.1.2,d.16.1.3 118813,118814