# List of top-scoring protein chains for T0421.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2z0hA	197	3.086		
2pbrA	195	4.585		
1e9fA	217	7.025	c.37.1.1	64811
1gtvA	214	8.631	c.37.1.1	70537
1nmyA	209	13.10	c.37.1.1	85883
2ga8A	359	14.20		
1nn5A	215	15.31	c.37.1.1	85892
1e98A	215	15.37	c.37.1.1	64804
1e9eA	215	15.66	c.37.1.1	64810
2plrA	213	16.03		
1znwA	207	18.62	c.37.1.1	125412
2qy9A	309	19.25		
1ftsA	295	19.29	a.24.13.1,c.37.1.10	16968,32279
1s4qA	228	20.10	c.37.1.1	98507
2ccgA	225	20.18		
1z8fA	228	20.62		
2j41A	207	21.55		
2gaoA	208	27.24	c.37.1.8	134891
3b9qA	302	27.48		
1ukzA	203	27.74	c.37.1.1	31840
2og2A	359	30.36		
1qhxA	178	31.40	c.37.1.3	31936
1f6bA	198	36.81	c.37.1.8	64986
2fmxA	195	37.46	c.37.1.8	133796
2ccjA	205	37.77		
2hydA	578	38.15	c.37.1.12,f.37.1.1	136875,136876
2fa9A	189	39.18		
1m2oB	190	42.20	c.37.1.8	78485
2gksA	546	42.93		
2j289	430	44.17		
4tmkA	213	47.25	c.37.1.1	31930
2v3cC	432	48.82		
1kdoA	227	51.92	c.37.1.1	68478
2yvuA	186	53.07		
2femA	227	53.47		
1lkxA	697	57.85	c.37.1.9	73981
2qtvB	167	59.21		
1bifA	469	62.88	c.37.1.7,c.60.1.4	31961,34003
2bifA	469	63.09	c.37.1.7,c.60.1.4	31963,34009
3bifA	468	63.53	c.37.1.7,c.60.1.4	31962,34008
2q34A	243	66.34		
1ckeA	227	71.06	c.37.1.1	31846
1q52A	314	71.11	c.14.1.3	95846
1rjmA	339	71.91	c.14.1.3	111826
1jj7A	260	72.17	c.37.1.12	63114
1uteA	313	75.10	d.159.1.1	42078
2hnaA	147	76.77		
3bioA	304	77.48		
2gzaA	361	79.24		
2fk8A	318	80.22	c.66.1.18	133648
1lvgA	198	83.79	c.37.1.1	78242