# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oe0A 230 0.03756 c.37.1.1 92788 2p67A 341 0.09888 2z0hA 197 0.4692 2qm8A 337 0.5207 2p5tB 253 0.6121 2pbrA 195 0.9481 1rz3A 201 0.9824 c.37.1.6 98132 1p9rA 418 1.099 c.37.1.11 94399 2q8pA 260 1.188 2gzaA 361 1.218 1np6A 174 1.289 c.37.1.10 85954 2ax4A 198 1.348 2vp4A 230 1.597 1n2zA 245 2.214 c.92.2.2 79865 5tmpA 213 2.618 c.37.1.1 31931 2an9A 207 2.746 c.37.1.1 127037 1njgA 250 3.309 c.37.1.20 85785 2oap1 511 3.578 1z8fA 228 3.858 1n4aA 252 4.040 c.92.2.2 85317 2pezA 179 4.045 2ccjA 205 4.225 1zm7A 230 4.731 2og2A 359 4.891 1gtvA 214 5.056 c.37.1.1 70537 1tq6A 413 5.395 c.37.1.8 107202 3b9qA 302 5.427 1s4qA 228 5.557 c.37.1.1 98507 2f1rA 171 5.615 1vmaA 306 5.622 a.24.13.1,c.37.1.10 108887,108888 2px0A 296 5.939 2j41A 207 6.284 1sq5A 308 6.501 c.37.1.6 105882 1esmA 316 6.714 c.37.1.6 31953 1ex7A 186 7.199 c.37.1.1 59537 1qhxA 178 7.524 c.37.1.3 31936 1gky 187 7.704 2bdtA 189 7.782 c.37.1.25 128344 1in4A 334 7.987 a.4.5.11,c.37.1.20 62597,62598 1g6oA 330 8.267 c.37.1.11 32430 2q3fA 181 8.691 1nn5A 215 9.114 c.37.1.1 85892 2pt7A 330 11.51 2yvuA 186 11.52 1bif 469 13.57 3c8uA 208 13.57 2qy9A 309 13.69 1s96A 219 13.75 c.37.1.1 98740 2g09A 297 14.16 1dciA 275 14.50 c.14.1.3 30918 1qhsA 178 15.67 c.37.1.3 31938 1znwA 207 16.23 c.37.1.1 125412 1htwA 158 16.55 c.37.1.18 71083 1h1nA 305 17.70 c.1.8.3 70855 2ga8A 359 17.72 2cbzA 237 18.66 3b9pA 297 19.57 3bifA 468 20.49 c.37.1.7,c.60.1.4 31962,34008 1xjcA 169 20.55 c.37.1.10 115387 1h65A 270 22.09 c.37.1.8 65640 2b8wA 328 22.26 2axpA 173 22.46 c.37.1.1 127497 1e9eA 215 22.59 c.37.1.1 64810 1xp3A 307 23.16 c.1.15.1 122210 1kagA 173 23.25 c.37.1.2 72249 1zu4A 320 23.46 1kdoA 227 24.56 c.37.1.1 68478 2qt1A 207 24.85 3cnyA 301 25.01 2qorA 204 25.32 1qf9A 194 25.75 c.37.1.1 31848 2ff7A 247 26.04 c.37.1.12 133377 1kngA 156 26.19 c.47.1.10 72777 1vqoV 71 26.45 a.2.2.1 120383 1p5zB 263 26.84 c.37.1.1 87815 1s8eA 333 28.00 d.159.1.4 105368 1m2oA 768 28.15 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1bouA 139 28.66 a.88.1.1 18521 2hf9A 226 30.21 2ixeA 271 30.51 1g8fA 511 30.65 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1d6jA 211 37.69 c.37.1.4 31940 1fj2A 232 37.82 c.69.1.14 34720 2nutA 769 38.14 2etvA 346 38.49 c.92.2.4 132372 1yrbA 262 38.52 c.37.1.10 123915 1pujA 282 39.67 c.37.1.8 88294 2pmkA 243 40.08 3tmkA 216 40.09 c.37.1.1 31920 2v26A 784 40.97 1nksA 194 43.81 c.37.1.1 31886 1fl9A 161 46.58 c.37.1.18 70137 1axeA 374 48.42 b.35.1.2,c.2.1.1 24681,29697 1assA 159 48.75 c.8.5.2 30818 1jr3A 373 50.17 a.80.1.1,c.37.1.20 63245,63246 1hnoA 280 50.91 c.14.1.3 61095 1in6A 334 50.98 a.4.5.11,c.37.1.20 62601,62602 2a1fA 247 51.16 c.73.1.3 125991 1svsA 353 52.57 c.37.1.8 106051 1c1dA 355 53.96 c.2.1.7,c.58.1.1 30270,33918 1sg4A 260 54.55 c.14.1.3 118957 1gz0A 253 54.74 c.116.1.1,d.79.3.3 76391,76392 2eyuA 261 55.02 2qgnA 322 55.36 1ee2A 373 55.45 b.35.1.2,c.2.1.1 24663,29679 1kgdA 180 55.95 c.37.1.1 68582 1qhfA 240 56.75 c.60.1.1 33960 1yzyA 413 57.36 c.146.1.1 124292 2cxxA 190 57.65 c.37.1.8 131013 2hhjA 267 57.89 c.60.1.1 136497 1lkxA 697 58.05 c.37.1.9 73981 1w9iA 770 59.63 2vqeI 128 60.19 2ejaA 338 60.59 2ookA 127 61.64 1a5tA 334 63.58 a.80.1.1,c.37.1.20 18450,32423 1odfA 290 67.09 c.37.1.6 92782 2gt1A 326 67.70 1axgA 374 68.00 b.35.1.2,c.2.1.1 24691,29707 2beqD 48 68.42 1t71A 281 68.47 d.159.1.9 112283 1viaA 175 68.77 c.37.1.2 100754 2r7aA 256 68.96 1br2A 791 69.80 b.34.3.1,c.37.1.9 24558,32155 2rhmA 193 70.75 1inlA 296 71.63 c.66.1.17 66220 2bifA 469 72.22 c.37.1.7,c.60.1.4 31963,34009 1yuwA 554 72.38 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1pbuA 162 73.80 d.58.46.1 88030 1lvk 762 74.26 2c95A 196 75.00 2bonA 332 75.31 1srvA 145 76.96 c.8.5.1 30817 1n8kA 374 77.62 b.35.1.2,c.2.1.1 80298,80299 2qxlA 658 78.46 1mnaA 298 79.54 c.69.1.22 79322 2dri 271 80.41 1gnlA 544 80.88 e.26.1.1 70287 1p3jA 217 81.64 c.37.1.1,g.41.2.1 94022,94023 1pcxA 810 81.83 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 2feaA 236 82.48 c.108.1.20 133327 1nsf 273 82.60 1ukz 203 86.31 1d0yA 761 87.34 b.34.3.1,c.37.1.9 24581,32178 2j5gA 263 87.36 2c9oA 456 88.42 1nrjB 218 89.17 c.37.1.8 86125 1phpA 394 89.56 c.86.1.1 35452