# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2p67A 341 0.02216 2z0hA 197 0.05865 2pbrA 195 0.1018 2qm8A 337 0.1086 1oe0A 230 0.2479 c.37.1.1 92788 1gtvA 214 0.2677 c.37.1.1 70537 2f1rA 171 0.5369 1np6A 174 0.5749 c.37.1.10 85954 5tmpA 213 0.7258 c.37.1.1 31931 2ax4A 198 0.7886 1nn5A 215 0.9188 c.37.1.1 85892 1z8fA 228 0.9682 1s4qA 228 1.073 c.37.1.1 98507 2p5tB 253 1.447 2pezA 179 1.477 2ccjA 205 1.506 2q8pA 260 1.518 2an9A 207 1.584 c.37.1.1 127037 1rz3A 201 1.589 c.37.1.6 98132 1p9rA 418 1.901 c.37.1.11 94399 2gzaA 361 2.066 1s96A 219 2.623 c.37.1.1 98740 2vqeI 128 2.673 4tmkA 213 3.766 c.37.1.1 31930 2oap1 511 3.816 1e9eA 215 3.863 c.37.1.1 64810 1g6oA 330 4.227 c.37.1.11 32430 2g09A 297 4.278 2yvuA 186 4.418 1esmA 316 4.706 c.37.1.6 31953 2j41A 207 4.891 2px0A 296 5.068 1assA 159 5.947 c.8.5.2 30818 2vp4A 230 6.067 2j00I 128 6.296 d.14.1.1 137847 2qy9A 309 6.343 1gky 187 6.489 1yuwA 554 6.529 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1ex7A 186 6.713 c.37.1.1 59537 1n2zA 245 6.828 c.92.2.2 79865 1n4aA 252 7.878 c.92.2.2 85317 3tmkA 216 8.124 c.37.1.1 31920 2q3fA 181 8.301 2pt7A 330 8.381 2ga8A 359 8.635 1h1nA 305 8.918 c.1.8.3 70855 3b9qA 302 9.124 1e4yA 214 9.174 c.37.1.1,g.41.2.1 31901,45181 1znwA 207 9.531 c.37.1.1 125412 1vmaA 306 9.800 a.24.13.1,c.37.1.10 108887,108888 1kdoA 227 9.851 c.37.1.1 68478 1tq6A 413 10.41 c.37.1.8 107202 2fh1A 344 11.03 d.109.1.1,d.109.1.1,d.109.1.1 133441,133442,133443 1xjcA 169 11.05 c.37.1.10 115387 1bif 469 11.54 1c1dA 355 11.71 c.2.1.7,c.58.1.1 30270,33918 2ff7A 247 12.73 c.37.1.12 133377 2bdtA 189 13.03 c.37.1.25 128344 2hhjA 267 14.14 c.60.1.1 136497 2pmkA 243 15.31 2cbzA 237 15.73 1axeA 374 16.19 b.35.1.2,c.2.1.1 24681,29697 2qxlA 658 16.67 2r7aA 256 16.79 1kay 381 17.23 2uubI 128 17.56 1bupA 386 18.56 c.55.1.1,c.55.1.1 33377,33378 3bifA 468 18.75 c.37.1.7,c.60.1.4 31962,34008 2a1fA 247 19.16 c.73.1.3 125991 2nwhA 317 20.46 2qorA 204 21.14 2f7tA 227 21.17 1p5zB 263 22.29 c.37.1.1 87815 1vqoV 71 22.42 a.2.2.1 120383 2bduA 297 22.62 1qhxA 178 22.66 c.37.1.3 31936 2bifA 469 22.82 c.37.1.7,c.60.1.4 31963,34009 1xp3A 307 22.93 c.1.15.1 122210 1akeA 214 23.57 c.37.1.1,g.41.2.1 31905,45185 1ass 159 23.84 1v7zA 260 24.33 c.125.1.1 100488 1qhsA 178 25.08 c.37.1.3 31938 1dciA 275 25.56 c.14.1.3 30918 3c8uA 208 25.71 1riiA 265 26.47 c.60.1.1 111807 1u6zA 513 27.04 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1bw9A 356 27.16 c.2.1.7,c.58.1.1 30274,33922 1ufwA 95 27.47 d.58.7.1 99358 1yzyA 413 27.75 c.146.1.1 124292 1ee2A 373 30.36 b.35.1.2,c.2.1.1 24663,29679 1q3kA 259 30.63 c.125.1.1 95693 1r4vA 171 30.65 a.22.1.4 97049 1a71A 374 30.80 b.35.1.2,c.2.1.1 24673,29689 1kagA 173 31.67 c.37.1.2 72249 2c95A 196 31.67 1t9hA 307 31.79 b.40.4.5,c.37.1.8 112358,112359 1ba1 386 31.90 1bifA 469 32.15 c.37.1.7,c.60.1.4 31961,34003 2og2A 359 32.40 1nrjB 218 34.13 c.37.1.8 86125 3cnyA 301 34.51 1nksA 194 34.58 c.37.1.1 31886 2bneA 241 39.26 c.73.1.3 128824 2ixeA 271 39.48 2feaA 236 39.78 c.108.1.20 133327 1zu4A 320 40.31 1gz0A 253 40.41 c.116.1.1,d.79.3.3 76391,76392 1in4A 334 40.51 a.4.5.11,c.37.1.20 62597,62598 1zm7A 230 41.38 1z6gA 218 41.63 2ookA 127 42.44 1p0fA 373 42.49 b.35.1.2,c.2.1.1 87642,87643 1ns5A 155 42.66 c.116.1.3 80705 2dri 271 42.82 2rhmA 193 42.88 1pcxA 810 42.93 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 2glfA 450 42.98 2vg3A 284 44.36 1fl9A 161 44.37 c.37.1.18 70137 2qgnA 322 44.91 2r79A 283 45.17 1axgA 374 46.60 b.35.1.2,c.2.1.1 24691,29707 1qhfA 240 46.83 c.60.1.1 33960 1d6jA 211 46.96 c.37.1.4 31940 1zinA 217 47.62 c.37.1.1,g.41.2.1 31915,45178 1t71A 281 49.79 d.159.1.9 112283 1kgdA 180 50.07 c.37.1.1 68582 1ukz 203 50.56 2vg2A 284 50.57 1sq5A 308 51.61 c.37.1.6 105882 1n8kA 374 51.61 b.35.1.2,c.2.1.1 80298,80299 2axpA 173 52.36 c.37.1.1 127497 2ebn 289 54.50 3b9pA 297 59.92 2olrA 540 61.39 c.91.1.1,c.109.1.1 139140,139141 1s8eA 333 64.84 d.159.1.4 105368 2qt1A 207 65.05 1g8fA 511 66.79 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1fj2A 232 67.70 c.69.1.14 34720 2bonA 332 68.70 1srvA 145 68.93 c.8.5.1 30817 1w9iA 770 70.60 1m7gA 211 71.89 c.37.1.4 78724 2hk0A 309 72.10 1e58A 249 73.34 c.60.1.1 59262 1htwA 158 74.69 c.37.1.18 71083 1t64A 377 75.78 c.42.1.2 106543 1dseA 292 76.05 a.93.1.1 59130 2ejaA 338 77.03 2ol5A 202 77.05 2yvaA 196 77.15 2ebnA 289 77.46 c.1.8.5 28990 1j8mF 297 77.91 a.24.13.1,c.37.1.10 62742,62743 2ohxA 374 79.55 b.35.1.2,c.2.1.1 24669,29685 1f2tA 149 80.50 c.37.1.12 32373 1jpkA 388 82.73 c.1.22.1 67026 2h0uA 217 87.66 1lkxA 697 88.54 c.37.1.9 73981 1kngA 156 89.84 c.47.1.10 72777