# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oe0A 230 0.06755 c.37.1.1 92788 2p67A 341 0.09612 2z0hA 197 0.1822 2qm8A 337 0.3144 2pbrA 195 0.3390 2q8pA 260 0.4613 2ccjA 205 0.7735 1gtvA 214 0.7808 c.37.1.1 70537 2ax4A 198 0.9462 2p5tB 253 0.9845 5tmpA 213 1.103 c.37.1.1 31931 1rz3A 201 1.241 c.37.1.6 98132 1n2zA 245 1.282 c.92.2.2 79865 2vp4A 230 1.381 1z8fA 228 1.396 1s4qA 228 1.519 c.37.1.1 98507 1p9rA 418 1.665 c.37.1.11 94399 1zm7A 230 1.975 1s96A 219 1.985 c.37.1.1 98740 1np6A 174 2.010 c.37.1.10 85954 2pezA 179 2.122 2an9A 207 2.163 c.37.1.1 127037 1n4aA 252 3.055 c.92.2.2 85317 2gzaA 361 3.211 1vmaA 306 3.313 a.24.13.1,c.37.1.10 108887,108888 2ga8A 359 3.327 2j41A 207 3.425 2px0A 296 3.643 1njgA 250 4.441 c.37.1.20 85785 1ukz 203 4.769 2qy9A 309 5.020 2qorA 204 5.170 2yvuA 186 5.659 1nn5A 215 5.789 c.37.1.1 85892 1gky 187 6.533 1znwA 207 6.747 c.37.1.1 125412 2f1rA 171 6.953 2oap1 511 7.077 1ex7A 186 7.842 c.37.1.1 59537 1tq6A 413 8.524 c.37.1.8 107202 3c8uA 208 8.974 1in4A 334 9.124 a.4.5.11,c.37.1.20 62597,62598 1esmA 316 9.168 c.37.1.6 31953 2q3fA 181 9.199 2bdtA 189 9.213 c.37.1.25 128344 3b9qA 302 9.592 1sq5A 308 9.756 c.37.1.6 105882 2og2A 359 10.63 2ff7A 247 11.10 c.37.1.12 133377 1zin 217 11.58 3tmkA 216 12.28 c.37.1.1 31920 1qhxA 178 12.29 c.37.1.3 31936 2g09A 297 12.35 1htwA 158 13.50 c.37.1.18 71083 2cbzA 237 13.56 1h1nA 305 13.60 c.1.8.3 70855 1bif 469 14.53 1p5zB 263 15.05 c.37.1.1 87815 2pmkA 243 16.32 1e9eA 215 16.84 c.37.1.1 64810 1zu4A 320 16.86 1kagA 173 16.96 c.37.1.2 72249 1m2oA 768 17.92 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 2pt7A 330 17.96 1qhsA 178 17.99 c.37.1.3 31938 2bwjA 199 18.73 2c95A 196 18.77 1s8eA 333 18.79 d.159.1.4 105368 1kdoA 227 20.47 c.37.1.1 68478 1qf9A 194 21.55 c.37.1.1 31848 1nksA 194 21.91 c.37.1.1 31886 2ixeA 271 22.01 1bouA 139 22.40 a.88.1.1 18521 2etvA 346 23.02 c.92.2.4 132372 3bifA 468 23.43 c.37.1.7,c.60.1.4 31962,34008 4tmkA 213 24.84 c.37.1.1 31930 2axpA 173 25.51 c.37.1.1 127497 2vqeI 128 26.34 1ukzA 203 28.17 c.37.1.1 31840 1h65A 270 28.85 c.37.1.8 65640 1kgdA 180 29.79 c.37.1.1 68582 1akyA 220 29.92 c.37.1.1,g.41.2.1 31896,45197 2qt1A 207 34.72 1xjcA 169 35.43 c.37.1.10 115387 1kngA 156 35.84 c.47.1.10 72777 1p3jA 217 36.20 c.37.1.1,g.41.2.1 94022,94023 1bhgA 613 36.25 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 1yuwA 554 38.03 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1d6jA 211 38.66 c.37.1.4 31940 1e4yA 214 39.51 c.37.1.1,g.41.2.1 31901,45181 1yrbA 262 39.67 c.37.1.10 123915 1fj2A 232 40.35 c.69.1.14 34720 1vqoV 71 40.86 a.2.2.1 120383 1z6gA 218 42.51 1fl9A 161 42.65 c.37.1.18 70137 2hf9A 226 43.26 2ozeA 298 43.29 3b9pA 297 45.20 3be4A 217 46.11 1jr3A 373 47.90 a.80.1.1,c.37.1.20 63245,63246 2b8wA 328 48.03 1pujA 282 49.39 c.37.1.8 88294 2h8lA 252 49.68 1z5zA 271 49.92 c.37.1.19 124499 1j8yF 297 50.04 a.24.13.1,c.37.1.10 62747,62748 2cxxA 190 50.07 c.37.1.8 131013 2r7aA 256 50.67 2r79A 283 51.70 1zinA 217 52.89 c.37.1.1,g.41.2.1 31915,45178 2qgnA 322 53.96 1gz0A 253 54.48 c.116.1.1,d.79.3.3 76391,76392 1nf2A 268 55.62 c.108.1.10 91849 1assA 159 56.47 c.8.5.2 30818 1axeA 374 59.63 b.35.1.2,c.2.1.1 24681,29697 1in6A 334 59.80 a.4.5.11,c.37.1.20 62601,62602 3cnyA 301 61.06 1viaA 175 61.80 c.37.1.2 100754 2nutA 769 64.36 1e1dA 553 64.45 e.26.1.1 43363 2dk7A 73 65.04 1xp3A 307 66.62 c.1.15.1 122210 2gt1A 326 67.13 1ee2A 373 67.87 b.35.1.2,c.2.1.1 24663,29679 2f7tA 227 67.96 1axgA 374 68.26 b.35.1.2,c.2.1.1 24691,29707 1sgwA 214 68.33 c.37.1.12 105541 2rhmA 193 70.71 1n8kA 374 71.03 b.35.1.2,c.2.1.1 80298,80299 2v26A 784 71.83 2dri 271 73.61 1svsA 353 75.45 c.37.1.8 106051 2uubI 128 75.82 2feaA 236 76.24 c.108.1.20 133327 2bifA 469 79.47 c.37.1.7,c.60.1.4 31963,34009 1gntA 553 79.96 e.26.1.1 70290 2o8nA 265 80.49 1bifA 469 81.08 c.37.1.7,c.60.1.4 31961,34003 1f2tA 149 82.10 c.37.1.12 32373 2rslA 140 82.19 c.53.1.1 33345 1g8fA 511 82.28 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1pcxA 810 83.52 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 2cdnA 201 84.05 c.37.1.1 130289 2ak3A 226 85.44 c.37.1.1,g.41.2.1 31892,45193 2a1fA 247 86.76 c.73.1.3 125991 2d9iA 96 86.98 1t9hA 307 87.86 b.40.4.5,c.37.1.8 112358,112359 2obaA 138 88.22 1edqA 540 88.55 b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 2nq2C 253 88.85 1rkqA 282 89.60 c.108.1.10 97621