# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oe0A 230 0.1335 c.37.1.1 92788 2p67A 341 0.1824 2qm8A 337 0.4829 2q8pA 260 0.6568 2z0hA 197 0.6651 2pbrA 195 0.8873 2ccjA 205 1.353 1gtvA 214 1.375 c.37.1.1 70537 1rz3A 201 1.510 c.37.1.6 98132 2p5tB 253 1.670 2ax4A 198 1.757 1n2zA 245 1.924 c.92.2.2 79865 2vp4A 230 2.199 5tmpA 213 2.403 c.37.1.1 31931 1p9rA 418 2.419 c.37.1.11 94399 1zm7A 230 2.940 1np6A 174 3.271 c.37.1.10 85954 1z8fA 228 3.602 2gzaA 361 3.738 2pezA 179 3.780 1n4aA 252 4.251 c.92.2.2 85317 2px0A 296 4.574 2an9A 207 5.388 c.37.1.1 127037 1s4qA 228 5.429 c.37.1.1 98507 1vmaA 306 5.719 a.24.13.1,c.37.1.10 108887,108888 2ga8A 359 6.161 1njgA 250 6.327 c.37.1.20 85785 1s96A 219 6.783 c.37.1.1 98740 1tq6A 413 7.728 c.37.1.8 107202 2j41A 207 7.925 2oap1 511 8.027 2qy9A 309 8.693 1ukz 203 10.71 2f1rA 171 11.17 1in4A 334 11.71 a.4.5.11,c.37.1.20 62597,62598 1gky 187 11.98 2qorA 204 12.52 3b9qA 302 13.14 2q3fA 181 13.81 1m2oA 768 14.36 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1h1nA 305 14.52 c.1.8.3 70855 2yvuA 186 14.72 1ex7A 186 15.04 c.37.1.1 59537 1s8eA 333 15.12 d.159.1.4 105368 1sq5A 308 15.39 c.37.1.6 105882 2og2A 359 15.48 3c8uA 208 16.38 2bdtA 189 16.50 c.37.1.25 128344 1bouA 139 17.03 a.88.1.1 18521 1bif 469 17.14 1esmA 316 18.46 c.37.1.6 31953 1qhxA 178 19.02 c.37.1.3 31936 2etvA 346 19.09 c.92.2.4 132372 2g09A 297 19.30 2ff7A 247 21.81 c.37.1.12 133377 1nn5A 215 22.03 c.37.1.1 85892 1p5zB 263 22.22 c.37.1.1 87815 2pt7A 330 23.31 1htwA 158 23.93 c.37.1.18 71083 1yuwA 554 26.93 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 3bifA 468 28.74 c.37.1.7,c.60.1.4 31962,34008 1vqoV 71 29.22 a.2.2.1 120383 1qhsA 178 29.54 c.37.1.3 31938 2c95A 196 30.48 1qf9A 194 31.95 c.37.1.1 31848 2vqeI 128 32.14 1zu4A 320 33.46 1kagA 173 34.25 c.37.1.2 72249 2cxxA 190 35.45 c.37.1.8 131013 1kdoA 227 35.65 c.37.1.1 68478 1zin 217 35.99 2pmkA 243 36.69 2axpA 173 36.83 c.37.1.1 127497 2cbzA 237 37.36 2ixeA 271 38.23 1znwA 207 38.67 c.37.1.1 125412 2bwjA 199 39.61 1kngA 156 43.53 c.47.1.10 72777 1fj2A 232 44.46 c.69.1.14 34720 1z5zA 271 44.67 c.37.1.19 124499 2qgnA 322 44.84 2nutA 769 47.35 1nksA 194 48.07 c.37.1.1 31886 2ozeA 298 48.72 2qt1A 207 49.72 3cnyA 301 49.74 2gt1A 326 51.35 1h65A 270 52.23 c.37.1.8 65640 1fl9A 161 52.62 c.37.1.18 70137 1assA 159 53.65 c.8.5.2 30818 1kgdA 180 55.29 c.37.1.1 68582 1jr3A 373 55.78 a.80.1.1,c.37.1.20 63245,63246 1axeA 374 56.51 b.35.1.2,c.2.1.1 24681,29697 2dri 271 57.87 3tmkA 216 59.15 c.37.1.1 31920 2o8nA 265 60.35 1bhgA 613 60.39 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 2dk7A 73 60.69 2feaA 236 60.72 c.108.1.20 133327 2f7tA 227 60.81 1ee2A 373 61.40 b.35.1.2,c.2.1.1 24663,29679 1g8fA 511 61.66 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1axgA 374 63.44 b.35.1.2,c.2.1.1 24691,29707 2h8lA 252 64.25 1pcxA 810 64.60 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 1e9eA 215 65.38 c.37.1.1 64810 1d6jA 211 66.77 c.37.1.4 31940 1n8kA 374 67.68 b.35.1.2,c.2.1.1 80298,80299 1edqA 540 70.33 b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1e4yA 214 70.66 c.37.1.1,g.41.2.1 31901,45181 2r79A 283 71.24 1gz0A 253 71.35 c.116.1.1,d.79.3.3 76391,76392 1yzyA 413 72.14 c.146.1.1 124292 3b9pA 297 74.86 1ns5A 155 74.96 c.116.1.3 80705 1yrbA 262 75.87 c.37.1.10 123915 2hf9A 226 75.95 1akyA 220 76.19 c.37.1.1,g.41.2.1 31896,45197 2b8wA 328 76.60 2bifA 469 78.02 c.37.1.7,c.60.1.4 31963,34009 1e1dA 553 78.33 e.26.1.1 43363 2a1fA 247 78.40 c.73.1.3 125991 1q3kA 259 80.75 c.125.1.1 95693 1xjcA 169 83.90 c.37.1.10 115387 1dciA 275 84.42 c.14.1.3 30918 1gntA 553 87.48 e.26.1.1 70290 1mnaA 298 87.94 c.69.1.22 79322 1ukzA 203 88.73 c.37.1.1 31840 1a71A 374 88.84 b.35.1.2,c.2.1.1 24673,29689 2hk0A 309 89.36