# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oe0A 230 0.07014 c.37.1.1 92788 2p67A 341 0.1023 2z0hA 197 0.2416 2qm8A 337 0.4118 2q8pA 260 0.4443 2pbrA 195 0.4866 2p5tB 253 0.8819 1gtvA 214 0.9301 c.37.1.1 70537 2ccjA 205 1.161 5tmpA 213 1.209 c.37.1.1 31931 1rz3A 201 1.327 c.37.1.6 98132 2vp4A 230 1.354 1n2zA 245 1.530 c.92.2.2 79865 2ax4A 198 1.626 1z8fA 228 1.678 1zm7A 230 1.853 1s96A 219 1.866 c.37.1.1 98740 1s4qA 228 2.004 c.37.1.1 98507 2an9A 207 2.024 c.37.1.1 127037 1p9rA 418 2.271 c.37.1.11 94399 1np6A 174 2.396 c.37.1.10 85954 2pezA 179 2.713 1ukz 203 2.924 2j41A 207 3.026 1n4aA 252 3.260 c.92.2.2 85317 2ga8A 359 3.444 1njgA 250 4.020 c.37.1.20 85785 1vmaA 306 4.188 a.24.13.1,c.37.1.10 108887,108888 2gzaA 361 4.435 2px0A 296 4.908 2qorA 204 5.705 2qy9A 309 6.498 1tq6A 413 6.552 c.37.1.8 107202 2yvuA 186 6.651 2oap1 511 6.764 1nn5A 215 7.342 c.37.1.1 85892 2f1rA 171 7.397 1in4A 334 7.733 a.4.5.11,c.37.1.20 62597,62598 1gky 187 8.398 1znwA 207 8.812 c.37.1.1 125412 2q3fA 181 9.042 2bdtA 189 9.046 c.37.1.25 128344 3c8uA 208 9.257 1ex7A 186 9.261 c.37.1.1 59537 2ff7A 247 9.97 c.37.1.12 133377 2og2A 359 11.55 1bif 469 11.66 1sq5A 308 12.12 c.37.1.6 105882 2cbzA 237 12.86 1qhxA 178 13.00 c.37.1.3 31936 1esmA 316 13.18 c.37.1.6 31953 3b9qA 302 14.80 1m2oA 768 14.92 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1h1nA 305 15.62 c.1.8.3 70855 1ukzA 203 16.21 c.37.1.1 31840 1zin 217 16.53 2pmkA 243 16.72 1qhsA 178 16.91 c.37.1.3 31938 1htwA 158 17.61 c.37.1.18 71083 2c95A 196 17.63 1qf9A 194 17.72 c.37.1.1 31848 2pt7A 330 18.72 3tmkA 216 18.83 c.37.1.1 31920 2bwjA 199 19.27 2g09A 297 19.92 1e9eA 215 20.41 c.37.1.1 64810 2ixeA 271 20.42 3bifA 468 20.44 c.37.1.7,c.60.1.4 31962,34008 1zu4A 320 20.66 1kdoA 227 20.99 c.37.1.1 68478 2axpA 173 23.47 c.37.1.1 127497 1kagA 173 23.77 c.37.1.2 72249 1s8eA 333 25.09 d.159.1.4 105368 1nksA 194 25.90 c.37.1.1 31886 1p5zB 263 26.63 c.37.1.1 87815 2cxxA 190 27.59 c.37.1.8 131013 1h65A 270 30.35 c.37.1.8 65640 1kngA 156 30.53 c.47.1.10 72777 2etvA 346 31.91 c.92.2.4 132372 2qgnA 322 32.62 2nutA 769 33.47 1akyA 220 33.62 c.37.1.1,g.41.2.1 31896,45197 1vqoV 71 33.72 a.2.2.1 120383 1kgdA 180 36.19 c.37.1.1 68582 2ozeA 298 37.82 3cnyA 301 38.18 1z5zA 271 40.78 c.37.1.19 124499 4tmkA 213 40.88 c.37.1.1 31930 2vqeI 128 40.94 1d6jA 211 42.90 c.37.1.4 31940 2h8lA 252 43.25 2qt1A 207 44.54 1fl9A 161 46.50 c.37.1.18 70137 1jr3A 373 47.15 a.80.1.1,c.37.1.20 63245,63246 1yrbA 262 47.19 c.37.1.10 123915 1fj2A 232 47.27 c.69.1.14 34720 1assA 159 49.70 c.8.5.2 30818 2b8wA 328 50.30 2r7aA 256 51.15 1bouA 139 51.75 a.88.1.1 18521 1pujA 282 51.81 c.37.1.8 88294 1xp3A 307 53.63 c.1.15.1 122210 1gz0A 253 55.49 c.116.1.1,d.79.3.3 76391,76392 3be4A 217 56.21 1p3jA 217 56.26 c.37.1.1,g.41.2.1 94022,94023 2a1fA 247 56.44 c.73.1.3 125991 2bifA 469 57.37 c.37.1.7,c.60.1.4 31963,34009 1ns5A 155 57.37 c.116.1.3 80705 1z6gA 218 57.43 2dri 271 57.83 1yuwA 554 58.29 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 2r79A 283 58.76 1in6A 334 59.05 a.4.5.11,c.37.1.20 62601,62602 2hk0A 309 59.83 2feaA 236 60.39 c.108.1.20 133327 1xjcA 169 61.02 c.37.1.10 115387 1e4yA 214 61.15 c.37.1.1,g.41.2.1 31901,45181 1e1dA 553 61.77 e.26.1.1 43363 1bifA 469 64.42 c.37.1.7,c.60.1.4 31961,34003 1zinA 217 65.12 c.37.1.1,g.41.2.1 31915,45178 2hf9A 226 66.04 1g6oA 330 66.68 c.37.1.11 32430 1q3kA 259 68.17 c.125.1.1 95693 2gt1A 326 70.36 2rhmA 193 71.68 1sgwA 214 73.38 c.37.1.12 105541 1bhgA 613 73.48 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 1dciA 275 73.57 c.14.1.3 30918 2v26A 784 74.28 1yzyA 413 76.47 c.146.1.1 124292 1pcxA 810 76.63 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 2ejaA 338 79.61 1odfA 290 81.34 c.37.1.6 92782 1edqA 540 81.83 b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 2o8nA 265 83.19 1g8fA 511 83.93 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1gntA 553 84.83 e.26.1.1 70290 1ee2A 373 85.65 b.35.1.2,c.2.1.1 24663,29679 2dk7A 73 85.69 1svsA 353 85.91 c.37.1.8 106051 3b9pA 297 86.61 1nrjB 218 87.06 c.37.1.8 86125 2bjkA 516 88.28 1f2tA 149 88.66 c.37.1.12 32373 2ookA 127 89.35 2qpxA 376 89.43