# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oe0A 230 0.4456 c.37.1.1 92788 2axpA 173 0.6340 c.37.1.1 127497 2z0hA 197 0.9181 2p5tB 253 0.9326 1rz3A 201 1.298 c.37.1.6 98132 2ga8A 359 1.322 2ax4A 198 1.354 1gtvA 214 1.587 c.37.1.1 70537 2yvuA 186 1.609 2ccjA 205 1.865 5tmpA 213 1.983 c.37.1.1 31931 2p67A 341 2.024 1np6A 174 2.125 c.37.1.10 85954 2pbrA 195 2.242 1ukz 203 2.434 2q8pA 260 2.896 2rhmA 193 3.205 2pezA 179 3.218 2px0A 296 4.217 2an9A 207 4.444 c.37.1.1 127037 1s4qA 228 4.700 c.37.1.1 98507 2vp4A 230 4.746 1nn5A 215 5.481 c.37.1.1 85892 1p5zB 263 5.487 c.37.1.1 87815 1h1nA 305 5.552 c.1.8.3 70855 1kagA 173 5.844 c.37.1.2 72249 1yuwA 554 6.077 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1s96A 219 6.320 c.37.1.1 98740 2b30A 301 6.512 c.108.1.10 127759 2j41A 207 7.399 1dciA 275 8.054 c.14.1.3 30918 2qm8A 337 8.254 1ex7A 186 8.832 c.37.1.1 59537 1z8fA 228 9.064 1kdoA 227 9.111 c.37.1.1 68478 1kay 381 9.162 1zm7A 230 9.198 2gzaA 361 9.237 1sq5A 308 9.290 c.37.1.6 105882 1znwA 207 9.523 c.37.1.1 125412 1bif 469 9.576 4tmkA 213 9.885 c.37.1.1 31930 1qhxA 178 9.97 c.37.1.3 31936 1bupA 386 10.05 c.55.1.1,c.55.1.1 33377,33378 2bdtA 189 10.53 c.37.1.25 128344 3tmkA 216 10.98 c.37.1.1 31920 1gky 187 11.84 1ba1 386 13.34 1vmaA 306 13.90 a.24.13.1,c.37.1.10 108887,108888 1tq6A 413 13.93 c.37.1.8 107202 1nf2A 268 14.60 c.108.1.10 91849 1bouA 139 14.74 a.88.1.1 18521 3bifA 468 15.24 c.37.1.7,c.60.1.4 31962,34008 1mnaA 298 15.31 c.69.1.22 79322 1qhsA 178 16.01 c.37.1.3 31938 1ukzA 203 16.47 c.37.1.1 31840 3b9qA 302 16.93 1e9eA 215 18.29 c.37.1.1 64810 3cnyA 301 18.51 2qy9A 309 19.36 2og2A 359 19.96 2bifA 469 20.54 c.37.1.7,c.60.1.4 31963,34009 2b8wA 328 20.88 2cbzA 237 20.99 1bifA 469 21.26 c.37.1.7,c.60.1.4 31961,34003 2qxlA 658 22.30 2c95A 196 22.31 3c8uA 208 22.63 1p9rA 418 22.90 c.37.1.11 94399 1t71A 281 24.81 d.159.1.9 112283 2feaA 236 25.03 c.108.1.20 133327 1assA 159 26.04 c.8.5.2 30818 1rkbA 173 26.08 c.37.1.1 111854 1esmA 316 27.40 c.37.1.6 31953 1rkqA 282 28.08 c.108.1.10 97621 1kezA 300 29.93 c.69.1.22 68546 1c1dA 355 30.70 c.2.1.7,c.58.1.1 30270,33918 1odfA 290 30.79 c.37.1.6 92782 2f7tA 227 31.09 2qt1A 207 32.46 2ff7A 247 35.58 c.37.1.12 133377 2qorA 204 36.24 1e4yA 214 36.40 c.37.1.1,g.41.2.1 31901,45181 1n2zA 245 37.14 c.92.2.2 79865 2f1rA 171 38.23 2bkhA 814 38.59 1xjcA 169 39.14 c.37.1.10 115387 1in4A 334 39.82 a.4.5.11,c.37.1.20 62597,62598 2bwjA 199 39.98 1o08A 221 41.99 c.108.1.6 86525 1nksA 194 42.21 c.37.1.1 31886 2j85A 122 45.48 d.321.1.1 138133 1qf9A 194 47.76 c.37.1.1 31848 1w9iA 770 47.97 2ookA 127 48.50 1ru0A 105 49.44 d.74.1.1 111937 1rlmA 271 49.64 c.108.1.10 111860 2pmkA 243 49.81 1n4aA 252 51.55 c.92.2.2 85317 1vqoV 71 52.08 a.2.2.1 120383 1d6jA 211 54.20 c.37.1.4 31940 1dcoA 104 55.31 d.74.1.1 39680 1h65A 270 55.47 c.37.1.8 65640 1ckeA 227 57.82 c.37.1.1 31846 1mvwA 840 57.90 i.15.1.1 79523 1dkgD 383 58.21 c.55.1.1,c.55.1.1 33427,33428 2g09A 297 59.82 1nzyA 269 59.97 c.14.1.3 30903 2v26A 784 62.79 1efdN 266 64.62 c.92.2.1 35597 2akaA 776 65.94 2r7aA 256 66.24 1z6gA 218 67.77 3b9pA 297 68.15 1axeA 374 68.83 b.35.1.2,c.2.1.1 24681,29697 2bbsA 290 70.15 2beqD 48 70.23 1uj2A 252 70.30 c.37.1.6 99452 2ixeA 271 70.84 1bw9A 356 72.30 c.2.1.7,c.58.1.1 30274,33922 1lkxA 697 76.24 c.37.1.9 73981 1rz2A 254 76.87 b.100.1.1 105130 1hnoA 280 77.61 c.14.1.3 61095 2pt7A 330 77.86 1zinA 217 78.41 c.37.1.1,g.41.2.1 31915,45178 2pt5A 168 78.90 1kp8A 547 78.95 a.129.1.1,c.8.5.1,d.56.1.1 84414,84415,84416 1gvnB 287 80.67 c.37.1.21 76354 1br2A 791 81.94 b.34.3.1,c.37.1.9 24558,32155 1htwA 158 82.16 c.37.1.18 71083 2itbA 206 84.08 1g6oA 330 84.83 c.37.1.11 32430 1ggvA 232 85.46 c.69.1.9 34683 1lvk 762 89.34 2bh1X 96 89.76