# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oe0A 230 0.2148 c.37.1.1 92788 2axpA 173 0.3897 c.37.1.1 127497 2og2A 359 0.4103 2oap1 511 0.5512 1h1nA 305 1.037 c.1.8.3 70855 1s4qA 228 1.078 c.37.1.1 98507 2cmuA 342 1.147 1dseA 292 1.426 a.93.1.1 59130 2qm8A 337 1.572 1znwA 207 1.896 c.37.1.1 125412 1nn5A 215 2.352 c.37.1.1 85892 1h65A 270 2.812 c.37.1.8 65640 1n4aA 252 2.986 c.92.2.2 85317 1p9rA 418 3.077 c.37.1.11 94399 1z8fA 228 3.228 4tmkA 213 3.408 c.37.1.1 31930 1s96A 219 3.419 c.37.1.1 98740 1umpA 631 3.506 a.102.4.2,a.102.4.2 99619,99620 2o8nA 265 3.823 1rz3A 201 4.147 c.37.1.6 98132 2cf5A 357 4.306 3bblA 287 4.705 2qtsA 438 4.789 1n2zA 245 4.853 c.92.2.2 79865 2q8pA 260 5.108 2vp4A 230 5.321 2c0hA 353 6.497 c.1.8.3 129594 1e9eA 215 6.517 c.37.1.1 64810 2p67A 341 7.058 2rhmA 193 7.260 3b9qA 302 7.657 1t3bA 211 8.329 c.47.1.9,d.17.3.1 106341,106342 1g6oA 330 8.893 c.37.1.11 32430 1zm7A 230 10.51 1n9eA 787 11.79 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 3c8dA 403 12.27 1e5mA 416 12.80 c.95.1.1,c.95.1.1 58973,58974 1qhsA 178 13.18 c.37.1.3 31938 1ox0A 430 13.52 c.95.1.1,c.95.1.1 87495,87496 2p8bA 369 13.77 2qgnA 322 14.57 2pbrA 195 15.48 2q3fA 181 15.60 2b3oA 532 16.25 2feaA 236 16.35 c.108.1.20 133327 2bdtA 189 16.65 c.37.1.25 128344 1axeA 374 16.91 b.35.1.2,c.2.1.1 24681,29697 1qwnA 1045 17.09 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 2bwjA 199 18.55 2a1fA 247 18.78 c.73.1.3 125991 2yvuA 186 18.84 2j0eA 266 19.14 2z0hA 197 19.39 2j41A 207 19.41 2fikA 287 20.32 b.1.1.2,d.19.1.1 133524,133525 1njgA 250 21.36 c.37.1.20 85785 1ee2A 373 21.45 b.35.1.2,c.2.1.1 24663,29679 2ptzA 432 22.05 2jmhA 119 23.39 1z45A 699 23.89 b.30.5.4,c.2.1.2 124427,124428 1gky 187 24.29 2cxxA 190 24.48 c.37.1.8 131013 1vqoV 71 24.72 a.2.2.1 120383 1p5zB 263 25.36 c.37.1.1 87815 1axgA 374 25.53 b.35.1.2,c.2.1.1 24691,29707 2f1rA 171 26.07 2qorA 204 26.39 1n8kA 374 27.31 b.35.1.2,c.2.1.1 80298,80299 2pmkA 243 27.53 1wb9A 800 27.63 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 120833,120834,120835,120836 2an9A 207 27.74 c.37.1.1 127037 2gzaA 361 28.27 1ex7A 186 28.57 c.37.1.1 59537 1d8cA 723 29.85 c.1.13.1 29325 2ejaA 338 29.94 2ff7A 247 29.97 c.37.1.12 133377 2f7tA 227 30.05 1e4yA 214 31.71 c.37.1.1,g.41.2.1 31901,45181 2ea7A 434 31.89 1a71A 374 32.41 b.35.1.2,c.2.1.1 24673,29689 1z63A 500 33.35 c.37.1.19,c.37.1.19 124502,124503 2h0qA 261 33.37 2hy5C 102 33.81 c.114.1.2 136867 1kngA 156 34.08 c.47.1.10 72777 1qh0A 295 34.52 b.43.4.2,c.25.1.1 68891,68892 1ctn 540 35.11 1ukz 203 37.49 1o7fA 469 38.68 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1pydA 556 38.92 c.31.1.3,c.36.1.5,c.36.1.9 31735,31773,31774 2etvA 346 39.67 c.92.2.4 132372 1ituA 369 40.10 c.1.9.7 71423 2eu8A 216 40.99 1e1dA 553 43.74 e.26.1.1 43363 2ob3A 330 44.34 2o4vA 411 44.85 1v04A 355 45.62 b.68.6.2 100240 1z6gA 218 45.83 2cmgA 262 46.17 1szqA 483 46.67 e.44.1.1 99045 1pieA 419 47.37 d.14.1.5,d.58.26.7 94706,94707 2nx9A 464 48.17 1mnaA 298 48.43 c.69.1.22 79322 2uubI 128 48.47 1k77A 260 48.83 c.1.15.5 72096 1kagA 173 48.86 c.37.1.2 72249 1kdoA 227 49.35 c.37.1.1 68478 1hwxA 501 49.42 c.2.1.7,c.58.1.1 30250,33898 1q0qA 406 49.62 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1ao0A 459 50.77 c.61.1.1,d.153.1.1 34049,41816 1yw5A 177 51.92 1d4xG 126 51.97 d.109.1.1 59109 1qumA 285 52.41 c.1.15.1 29393 1v7zA 260 53.46 c.125.1.1 100488 1z5zA 271 54.81 c.37.1.19 124499 1wb0A 445 55.16 c.1.8.5,d.26.3.1 120825,120826 2fp8A 322 57.28 2ccjA 205 60.02 2c95A 196 60.04 1gtvA 214 60.37 c.37.1.1 70537 2c9oA 456 61.00 1phpA 394 62.38 c.86.1.1 35452 2pt5A 168 63.05 1g8fA 511 64.86 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1q3kA 259 64.87 c.125.1.1 95693 1ho1A 242 65.48 c.1.24.1 61097 1s5aA 150 67.30 d.17.4.10 98525 2r79A 283 67.53 2hs8A 402 67.94 1j0hA 588 68.12 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1xx4A 261 68.24 c.14.1.3 116138 1ogpA 393 69.12 b.1.18.6,d.176.1.1 92927,92928 2oikA 154 70.21 1kgdA 180 70.37 c.37.1.1 68582 2plrA 213 70.48 1s8eA 333 71.64 d.159.1.4 105368 1wljA 189 73.05 c.55.3.5 114734 2akaB 299 73.17 c.37.1.8 126914 1pujA 282 73.49 c.37.1.8 88294 3be4A 217 73.50 1bn8A 420 73.76 b.80.1.1 28022 3bifA 468 74.34 c.37.1.7,c.60.1.4 31962,34008 1sq5A 308 75.03 c.37.1.6 105882 5tmpA 213 75.92 c.37.1.1 31931 1gmlA 178 76.20 c.8.5.2 70273 1qf9A 194 76.36 c.37.1.1 31848 2bkhA 814 76.57 1p3jA 217 77.08 c.37.1.1,g.41.2.1 94022,94023 1auoA 218 77.32 c.69.1.14 34716 2r98A 456 78.28 1jv2A 957 78.43 b.1.15.1,b.1.15.1,b.1.15.1,b.69.8.1 67334,67335,67336,67337 1mwmA 320 78.91 c.55.1.1,c.55.1.1 79580,79581 1nbaA 264 79.44 c.33.1.3 31753 2nxwA 565 79.55 1htwA 158 80.68 c.37.1.18 71083 1yydA 357 81.50 a.93.1.1 124212 3cbwA 353 81.93 2qy9A 309 82.96 1rydA 387 83.19 c.2.1.3,d.81.1.5 118801,118802 2jrnA 163 83.80 2fug1 438 84.79 1o6gA 710 84.84 b.69.7.1,c.69.1.4 81087,81088 1ile 821 85.32 2gagA 965 85.33 2b8wA 328 85.52 1bxkA 355 86.31 c.2.1.2 29803 175lA 164 88.63 d.2.1.3 36924 1fj2A 232 89.72 c.69.1.14 34720 1u24A 337 89.99 c.45.1.4 112968