# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1oe0A 230 0.1698 c.37.1.1 92788 2p67A 341 0.1758 2z0hA 197 0.1788 2pbrA 195 0.4313 2qm8A 337 0.4907 1p9rA 418 0.7182 c.37.1.11 94399 2p5tB 253 0.7978 1rz3A 201 0.8032 c.37.1.6 98132 1np6A 174 0.9938 c.37.1.10 85954 1s4qA 228 1.105 c.37.1.1 98507 1z8fA 228 1.329 2ax4A 198 1.345 2q8pA 260 1.462 1gtvA 214 1.476 c.37.1.1 70537 2gzaA 361 1.565 2an9A 207 2.027 c.37.1.1 127037 1nn5A 215 2.292 c.37.1.1 85892 2ga8A 359 2.308 1n2zA 245 2.605 c.92.2.2 79865 5tmpA 213 2.734 c.37.1.1 31931 2og2A 359 2.985 2j41A 207 2.985 1vmaA 306 3.017 a.24.13.1,c.37.1.10 108887,108888 1s96A 219 3.017 c.37.1.1 98740 2pezA 179 3.208 1n4aA 252 3.361 c.92.2.2 85317 1tq6A 413 3.469 c.37.1.8 107202 3b9qA 302 3.618 1znwA 207 3.710 c.37.1.1 125412 2qy9A 309 3.941 2vp4A 230 4.474 2oap1 511 4.490 1gky 187 4.861 1sq5A 308 5.049 c.37.1.6 105882 2px0A 296 5.054 1ex7A 186 5.347 c.37.1.1 59537 1esmA 316 5.629 c.37.1.6 31953 1e9eA 215 7.200 c.37.1.1 64810 1qhxA 178 7.447 c.37.1.3 31936 2bdtA 189 8.022 c.37.1.25 128344 2q3fA 181 8.333 3c8uA 208 8.417 1kdoA 227 8.513 c.37.1.1 68478 1g6oA 330 9.012 c.37.1.11 32430 2ff7A 247 9.054 c.37.1.12 133377 1in4A 334 9.98 a.4.5.11,c.37.1.20 62597,62598 1zm7A 230 9.98 2cbzA 237 10.94 1njgA 250 11.03 c.37.1.20 85785 2f1rA 171 11.65 2ccjA 205 12.34 2qorA 204 12.36 1qhsA 178 12.97 c.37.1.3 31938 1kagA 173 13.78 c.37.1.2 72249 4tmkA 213 14.43 c.37.1.1 31930 1h65A 270 16.18 c.37.1.8 65640 2pmkA 243 16.41 2axpA 173 16.42 c.37.1.1 127497 1zu4A 320 16.81 1vqoV 71 18.30 a.2.2.1 120383 1xp3A 307 18.91 c.1.15.1 122210 3tmkA 216 19.31 c.37.1.1 31920 2yvuA 186 20.54 2cxxA 190 21.19 c.37.1.8 131013 1bouA 139 22.18 a.88.1.1 18521 1ukz 203 22.80 2b8wA 328 23.62 2ixeA 271 24.00 2c95A 196 24.15 1h1nA 305 25.14 c.1.8.3 70855 2g09A 297 25.41 1bif 469 25.41 1htwA 158 26.25 c.37.1.18 71083 3bifA 468 27.41 c.37.1.7,c.60.1.4 31962,34008 2etvA 346 28.70 c.92.2.4 132372 1dciA 275 29.03 c.14.1.3 30918 1s8eA 333 30.40 d.159.1.4 105368 1d6jA 211 30.53 c.37.1.4 31940 2hf9A 226 30.67 1xjcA 169 32.12 c.37.1.10 115387 1p5zB 263 32.48 c.37.1.1 87815 1kngA 156 37.00 c.47.1.10 72777 2r7aA 256 37.85 1qf9A 194 40.31 c.37.1.1 31848 1kgdA 180 41.75 c.37.1.1 68582 1fj2A 232 43.18 c.69.1.14 34720 2vqeI 128 43.28 2qt1A 207 44.13 1e4yA 214 44.74 c.37.1.1,g.41.2.1 31901,45181 1z6gA 218 44.95 1t71A 281 47.25 d.159.1.9 112283 1ybdA 239 48.21 c.73.1.3 122884 1z5zA 271 48.99 c.37.1.19 124499 1yrbA 262 49.07 c.37.1.10 123915 2eyuA 261 49.09 1p3jA 217 49.60 c.37.1.1,g.41.2.1 94022,94023 1nksA 194 50.71 c.37.1.1 31886 2jerA 389 51.89 1j8yF 297 51.99 a.24.13.1,c.37.1.10 62747,62748 1svsA 353 52.14 c.37.1.8 106051 1m2oA 768 54.88 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1yuwA 554 56.23 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1assA 159 56.81 c.8.5.2 30818 1in6A 334 57.32 a.4.5.11,c.37.1.20 62601,62602 2v26A 784 58.27 1hnoA 280 60.86 c.14.1.3 61095 1zinA 217 61.64 c.37.1.1,g.41.2.1 31915,45178 1jr3A 373 61.79 a.80.1.1,c.37.1.20 63245,63246 1w9iA 770 62.31 2dri 271 62.70 2bwjA 199 62.77 2f7tA 227 62.78 1mnaA 298 63.63 c.69.1.22 79322 1gz0A 253 65.07 c.116.1.1,d.79.3.3 76391,76392 1axeA 374 65.88 b.35.1.2,c.2.1.1 24681,29697 1pujA 282 65.98 c.37.1.8 88294 1j8mF 297 65.99 a.24.13.1,c.37.1.10 62742,62743 1g8fA 511 67.56 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 2qxlA 658 68.16 1c1dA 355 70.11 c.2.1.7,c.58.1.1 30270,33918 2nutA 769 70.16 2rhmA 193 70.70 2c9oA 456 73.29 2qgnA 322 73.80 2cghA 268 75.25 2r79A 283 75.34 1nsf 273 75.83 1j3eA 115 75.99 d.228.1.1 103834 3cnyA 301 77.57 1axgA 374 78.81 b.35.1.2,c.2.1.1 24691,29707 2hk0A 309 78.98 2hhjA 267 79.48 c.60.1.1 136497 1f2tA 149 80.60 c.37.1.12 32373 1m7gA 211 81.02 c.37.1.4 78724 3b9pA 297 81.05 1gmlA 178 82.28 c.8.5.2 70273 2bkhA 814 83.71 1kezA 300 83.91 c.69.1.22 68546 1v7zA 260 84.85 c.125.1.1 100488 1ee2A 373 85.15 b.35.1.2,c.2.1.1 24663,29679 1fl9A 161 87.68 c.37.1.18 70137 1ewsA 32 88.91 g.9.1.1 59534 2ozeA 298 89.80 2pt7A 330 89.89 3bblA 287 90.00