# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2p67A 341 0.06300 1oe0A 230 0.1025 c.37.1.1 92788 2z0hA 197 0.4947 2qm8A 337 0.5268 2q8pA 260 1.755 1p9rA 418 1.949 c.37.1.11 94399 2vp4A 230 1.950 2ax4A 198 2.070 2pbrA 195 2.171 1np6A 174 2.427 c.37.1.10 85954 1rz3A 201 2.615 c.37.1.6 98132 2p5tB 253 3.288 2px0A 296 3.294 1vmaA 306 3.313 a.24.13.1,c.37.1.10 108887,108888 2gzaA 361 3.410 1gtvA 214 3.924 c.37.1.1 70537 1z8fA 228 4.502 1n2zA 245 4.616 c.92.2.2 79865 1ukz 203 5.038 1njgA 250 5.322 c.37.1.20 85785 1s4qA 228 5.861 c.37.1.1 98507 1n4aA 252 6.609 c.92.2.2 85317 2an9A 207 9.898 c.37.1.1 127037 1tq6A 413 10.37 c.37.1.8 107202 1zm7A 230 10.80 1nn5A 215 11.14 c.37.1.1 85892 2pezA 179 11.56 1h1nA 305 11.93 c.1.8.3 70855 1sq5A 308 12.70 c.37.1.6 105882 2oap1 511 12.86 2og2A 359 13.34 1esmA 316 14.48 c.37.1.6 31953 3b9qA 302 16.36 2qy9A 309 16.96 2j41A 207 17.13 1gky 187 17.46 5tmpA 213 18.58 c.37.1.1 31931 1ex7A 186 18.74 c.37.1.1 59537 2f1rA 171 21.02 2ga8A 359 21.05 1kagA 173 21.90 c.37.1.2 72249 1e9eA 215 22.26 c.37.1.1 64810 2vqeI 128 22.60 1s96A 219 22.75 c.37.1.1 98740 1znwA 207 24.06 c.37.1.1 125412 1zu4A 320 26.30 1s8eA 333 27.12 d.159.1.4 105368 2etvA 346 27.25 c.92.2.4 132372 2uubI 128 28.11 2q3fA 181 28.80 1qhxA 178 29.29 c.37.1.3 31936 1xjcA 169 31.59 c.37.1.10 115387 2g09A 297 32.49 2qt1A 207 33.85 2qorA 204 33.94 2bdtA 189 33.96 c.37.1.25 128344 2f7tA 227 35.25 2cbzA 237 35.58 2qgnA 322 35.65 3b9pA 297 35.70 1fl9A 161 36.19 c.37.1.18 70137 1p5zB 263 37.34 c.37.1.1 87815 2b8wA 328 37.50 1axeA 374 37.96 b.35.1.2,c.2.1.1 24681,29697 2ff7A 247 38.44 c.37.1.12 133377 1h65A 270 39.87 c.37.1.8 65640 2yvuA 186 40.11 1qhsA 178 40.76 c.37.1.3 31938 1d6jA 211 41.82 c.37.1.4 31940 1kngA 156 45.43 c.47.1.10 72777 2bwjA 199 45.98 2ccjA 205 46.39 1xp3A 307 47.84 c.1.15.1 122210 1ee2A 373 50.22 b.35.1.2,c.2.1.1 24663,29679 1kdoA 227 50.54 c.37.1.1 68478 1vqoV 71 51.74 a.2.2.1 120383 2axpA 173 51.98 c.37.1.1 127497 1fj2A 232 52.50 c.69.1.14 34720 1htwA 158 56.07 c.37.1.18 71083 4tmkA 213 56.40 c.37.1.1 31930 2eyuA 261 59.04 3c8uA 208 59.14 1in4A 334 59.40 a.4.5.11,c.37.1.20 62597,62598 2pmkA 243 59.49 1qf9A 194 59.58 c.37.1.1 31848 1m2oA 768 61.15 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1t71A 281 63.11 d.159.1.9 112283 1gz0A 253 64.16 c.116.1.1,d.79.3.3 76391,76392 3tmkA 216 66.75 c.37.1.1 31920 2o8nA 265 67.92 1bif 469 68.90 2nutA 769 69.46 1axgA 374 69.63 b.35.1.2,c.2.1.1 24691,29707 1a71A 374 70.26 b.35.1.2,c.2.1.1 24673,29689 2c95A 196 71.62 1dciA 275 71.64 c.14.1.3 30918 1efdN 266 73.36 c.92.2.1 35597 1inlA 296 76.76 c.66.1.17 66220 2ixeA 271 77.09 1f2tA 149 79.33 c.37.1.12 32373 1yuwA 554 79.64 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1t9hA 307 85.15 b.40.4.5,c.37.1.8 112358,112359 1nksA 194 85.93 c.37.1.1 31886 1jr3A 373 86.60 a.80.1.1,c.37.1.20 63245,63246 1rkqA 282 87.77 c.108.1.10 97621 1t3bA 211 88.76 c.47.1.9,d.17.3.1 106341,106342