# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2p67A 341 0.04242 2z0hA 197 0.1078 1oe0A 230 0.1403 c.37.1.1 92788 2pbrA 195 0.2134 2qm8A 337 0.2662 1gtvA 214 0.5147 c.37.1.1 70537 1np6A 174 0.7777 c.37.1.10 85954 2q8pA 260 1.196 1rz3A 201 1.231 c.37.1.6 98132 5tmpA 213 1.273 c.37.1.1 31931 2p5tB 253 1.322 2ax4A 198 1.356 1nn5A 215 1.392 c.37.1.1 85892 2f1rA 171 1.481 1p9rA 418 1.599 c.37.1.11 94399 1z8fA 228 1.626 2gzaA 361 1.718 1s96A 219 1.789 c.37.1.1 98740 1s4qA 228 1.906 c.37.1.1 98507 1n2zA 245 2.337 c.92.2.2 79865 2an9A 207 2.473 c.37.1.1 127037 2pezA 179 2.895 1e9eA 215 3.087 c.37.1.1 64810 2vp4A 230 3.108 1znwA 207 3.504 c.37.1.1 125412 2ga8A 359 3.740 1tq6A 413 3.741 c.37.1.8 107202 1n4aA 252 3.914 c.92.2.2 85317 2px0A 296 4.274 1vmaA 306 4.929 a.24.13.1,c.37.1.10 108887,108888 2j41A 207 5.774 1zm7A 230 6.166 2oap1 511 6.253 3tmkA 216 6.320 c.37.1.1 31920 2ccjA 205 6.613 1gky 187 6.964 1ex7A 186 7.272 c.37.1.1 59537 3b9qA 302 7.296 2qorA 204 7.494 1esmA 316 7.534 c.37.1.6 31953 2og2A 359 7.972 1sq5A 308 8.338 c.37.1.6 105882 1h1nA 305 8.786 c.1.8.3 70855 2vqeI 128 9.466 1ukz 203 9.636 2q3fA 181 10.31 1xjcA 169 10.49 c.37.1.10 115387 1kdoA 227 11.47 c.37.1.1 68478 2bdtA 189 11.47 c.37.1.25 128344 4tmkA 213 12.73 c.37.1.1 31930 2cbzA 237 13.06 1qhxA 178 13.33 c.37.1.3 31936 1njgA 250 14.02 c.37.1.20 85785 1bif 469 15.38 2uubI 128 15.43 3bifA 468 16.17 c.37.1.7,c.60.1.4 31962,34008 2ff7A 247 17.50 c.37.1.12 133377 1d6jA 211 17.85 c.37.1.4 31940 2yvuA 186 18.01 1qhsA 178 18.80 c.37.1.3 31938 2qy9A 309 22.94 2etvA 346 23.55 c.92.2.4 132372 1axeA 374 23.82 b.35.1.2,c.2.1.1 24681,29697 2g09A 297 24.72 1assA 159 26.57 c.8.5.2 30818 1yuwA 554 27.08 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 2pmkA 243 27.29 3b9pA 297 27.95 1nksA 194 28.68 c.37.1.1 31886 1kagA 173 29.10 c.37.1.2 72249 1p5zB 263 29.26 c.37.1.1 87815 1c1dA 355 29.53 c.2.1.7,c.58.1.1 30270,33918 1h65A 270 29.82 c.37.1.8 65640 2bwjA 199 30.17 1nrjB 218 30.18 c.37.1.8 86125 1in4A 334 30.46 a.4.5.11,c.37.1.20 62597,62598 1bouA 139 30.54 a.88.1.1 18521 2qt1A 207 30.59 2c95A 196 30.72 1z6gA 218 32.34 2ixeA 271 32.99 2pt7A 330 33.57 1t9hA 307 35.15 b.40.4.5,c.37.1.8 112358,112359 1zu4A 320 35.43 2ozeA 298 35.87 1pujA 282 36.03 c.37.1.8 88294 1kngA 156 36.46 c.47.1.10 72777 3c8uA 208 37.74 2r7aA 256 40.23 1f2tA 149 40.70 c.37.1.12 32373 2hf9A 226 41.36 2f7tA 227 41.95 1vqoV 71 42.52 a.2.2.1 120383 1e4yA 214 43.02 c.37.1.1,g.41.2.1 31901,45181 2axpA 173 43.22 c.37.1.1 127497 2hhjA 267 43.40 c.60.1.1 136497 1nw8A 319 43.51 c.66.1.11 86292 1w9iA 770 46.29 1fl9A 161 47.39 c.37.1.18 70137 1dciA 275 48.21 c.14.1.3 30918 1ee2A 373 50.15 b.35.1.2,c.2.1.1 24663,29679 2qgnA 322 52.10 1svsA 353 53.16 c.37.1.8 106051 2bifA 469 55.53 c.37.1.7,c.60.1.4 31963,34009 1jr3A 373 56.06 a.80.1.1,c.37.1.20 63245,63246 1bifA 469 56.52 c.37.1.7,c.60.1.4 31961,34003 2bkhA 814 57.04 1kgdA 180 57.55 c.37.1.1 68582 2a1fA 247 60.14 c.73.1.3 125991 2eyuA 261 60.24 1uj2A 252 60.44 c.37.1.6 99452 1t71A 281 64.29 d.159.1.9 112283 1zinA 217 64.68 c.37.1.1,g.41.2.1 31915,45178 1axgA 374 67.07 b.35.1.2,c.2.1.1 24691,29707 1g6oA 330 68.50 c.37.1.11 32430 2obaA 138 69.16 2j00I 128 69.31 d.14.1.1 137847 1a71A 374 72.04 b.35.1.2,c.2.1.1 24673,29689 1p3jA 217 73.40 c.37.1.1,g.41.2.1 94022,94023 1htwA 158 73.58 c.37.1.18 71083 1xp3A 307 74.91 c.1.15.1 122210 1qf9A 194 75.10 c.37.1.1 31848 2dri 271 75.12 2v26A 784 75.99 1fj2A 232 76.39 c.69.1.14 34720 1ewsA 32 76.59 g.9.1.1 59534 1efdN 266 76.67 c.92.2.1 35597 1e9rA 437 76.79 c.37.1.11 64827 1bupA 386 77.53 c.55.1.1,c.55.1.1 33377,33378 2nwhA 317 77.66 2r79A 283 79.35 1b8aA 438 80.26 b.40.4.1,d.104.1.1 25244,40765 1viaA 175 82.75 c.37.1.2 100754 1lkxA 697 82.94 c.37.1.9 73981 2rhmA 193 84.85 1n8kA 374 85.31 b.35.1.2,c.2.1.1 80298,80299 1ass 159 86.22 1qhfA 240 86.41 c.60.1.1 33960 2ol5A 202 87.06 1odfA 290 87.43 c.37.1.6 92782 2cxxA 190 87.88 c.37.1.8 131013 2nq2C 253 88.07 1gz0A 253 88.51 c.116.1.1,d.79.3.3 76391,76392 1bw9A 356 88.56 c.2.1.7,c.58.1.1 30274,33922 1zin 217 89.40 1rkbA 173 89.98 c.37.1.1 111854