# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2p67A 341 0.05412 2z0hA 197 0.09140 1oe0A 230 0.1795 c.37.1.1 92788 2pbrA 195 0.3001 2qm8A 337 0.4137 1s4qA 228 0.7659 c.37.1.1 98507 1np6A 174 0.8088 c.37.1.10 85954 2q8pA 260 0.8869 1gtvA 214 1.163 c.37.1.1 70537 1z8fA 228 1.318 1rz3A 201 1.319 c.37.1.6 98132 1s96A 219 1.321 c.37.1.1 98740 1nn5A 215 1.411 c.37.1.1 85892 1znwA 207 1.449 c.37.1.1 125412 5tmpA 213 1.532 c.37.1.1 31931 2ccjA 205 1.589 2f1rA 171 1.732 2gzaA 361 1.767 2ax4A 198 1.800 2an9A 207 1.889 c.37.1.1 127037 2p5tB 253 2.046 1n2zA 245 2.284 c.92.2.2 79865 1n4aA 252 2.486 c.92.2.2 85317 1p9rA 418 2.660 c.37.1.11 94399 2j41A 207 3.106 2pezA 179 3.823 2ga8A 359 4.014 1vmaA 306 4.338 a.24.13.1,c.37.1.10 108887,108888 1e9eA 215 4.548 c.37.1.1 64810 1tq6A 413 4.685 c.37.1.8 107202 1gky 187 5.357 2og2A 359 5.509 2px0A 296 5.687 2cbzA 237 5.788 2vp4A 230 5.943 2oap1 511 6.256 2ff7A 247 6.614 c.37.1.12 133377 1ukz 203 6.639 2qorA 204 6.911 2bdtA 189 7.066 c.37.1.25 128344 1ex7A 186 7.367 c.37.1.1 59537 3tmkA 216 7.559 c.37.1.1 31920 1sq5A 308 8.058 c.37.1.6 105882 1zm7A 230 8.349 2pmkA 243 8.507 1njgA 250 8.595 c.37.1.20 85785 2yvuA 186 9.744 2q3fA 181 9.763 1esmA 316 10.19 c.37.1.6 31953 1h1nA 305 10.85 c.1.8.3 70855 3b9qA 302 10.93 4tmkA 213 11.32 c.37.1.1 31930 1bif 469 11.87 1xjcA 169 11.98 c.37.1.10 115387 2ixeA 271 14.50 1qhxA 178 14.81 c.37.1.3 31936 1kdoA 227 14.84 c.37.1.1 68478 2g09A 297 15.73 1qhsA 178 16.65 c.37.1.3 31938 2etvA 346 16.87 c.92.2.4 132372 3bifA 468 17.12 c.37.1.7,c.60.1.4 31962,34008 2r7aA 256 17.30 1h65A 270 17.39 c.37.1.8 65640 3c8uA 208 20.18 2vqeI 128 20.85 1f2tA 149 21.90 c.37.1.12 32373 1zu4A 320 22.03 1z6gA 218 22.49 1axeA 374 22.69 b.35.1.2,c.2.1.1 24681,29697 2c95A 196 22.89 1yuwA 554 22.97 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 2pt7A 330 23.15 1kagA 173 23.40 c.37.1.2 72249 2qy9A 309 23.53 1nksA 194 25.91 c.37.1.1 31886 1kgdA 180 29.05 c.37.1.1 68582 1ee2A 373 29.28 b.35.1.2,c.2.1.1 24663,29679 2qt1A 207 29.34 1p5zB 263 29.60 c.37.1.1 87815 1in4A 334 31.64 a.4.5.11,c.37.1.20 62597,62598 1gz0A 253 34.06 c.116.1.1,d.79.3.3 76391,76392 1fl9A 161 34.86 c.37.1.18 70137 2qgnA 322 35.01 2plrA 213 35.21 1d6jA 211 35.53 c.37.1.4 31940 1htwA 158 35.77 c.37.1.18 71083 1fj2A 232 35.83 c.69.1.14 34720 1odfA 290 36.50 c.37.1.6 92782 1dciA 275 38.79 c.14.1.3 30918 1vqoV 71 39.27 a.2.2.1 120383 1a71A 374 40.90 b.35.1.2,c.2.1.1 24673,29689 1w9iA 770 41.40 1axgA 374 41.92 b.35.1.2,c.2.1.1 24691,29707 1bifA 469 42.46 c.37.1.7,c.60.1.4 31961,34003 2bifA 469 42.83 c.37.1.7,c.60.1.4 31963,34009 2axpA 173 44.92 c.37.1.1 127497 1e4yA 214 45.89 c.37.1.1,g.41.2.1 31901,45181 1s8eA 333 46.73 d.159.1.4 105368 1t71A 281 46.81 d.159.1.9 112283 2fh1A 344 47.00 d.109.1.1,d.109.1.1,d.109.1.1 133441,133442,133443 3cerA 343 47.45 1xp3A 307 47.75 c.1.15.1 122210 1svsA 353 47.94 c.37.1.8 106051 2hf9A 226 47.95 1nrjB 218 48.88 c.37.1.8 86125 1m2oA 768 49.59 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1ji0A 240 51.70 c.37.1.12 71665 1g6oA 330 51.98 c.37.1.11 32430 1sgwA 214 52.51 c.37.1.12 105541 2pzeA 229 52.86 2uubI 128 53.63 3b9pA 297 55.78 2dri 271 56.29 1qf9A 194 56.94 c.37.1.1 31848 1c1dA 355 57.85 c.2.1.7,c.58.1.1 30270,33918 1assA 159 57.93 c.8.5.2 30818 2a1fA 247 58.41 c.73.1.3 125991 1n8kA 374 58.89 b.35.1.2,c.2.1.1 80298,80299 1zinA 217 59.34 c.37.1.1,g.41.2.1 31915,45178 2v26A 784 60.53 2rhmA 193 61.32 2bwjA 199 61.44 2nq2C 253 61.78 2r79A 283 63.50 1t9hA 307 63.73 b.40.4.5,c.37.1.8 112358,112359 1e9rA 437 64.45 c.37.1.11 64827 2bkhA 814 64.53 2j00I 128 64.55 d.14.1.1 137847 1pujA 282 64.57 c.37.1.8 88294 1hnoA 280 65.76 c.14.1.3 61095 2cghA 268 65.90 1uj2A 252 68.23 c.37.1.6 99452 2f7tA 227 68.55 2nutA 769 72.22 2nwhA 317 75.18 1p0fA 373 80.42 b.35.1.2,c.2.1.1 87642,87643 1kay 381 81.65 2gt1A 326 81.68 1j3eA 115 82.85 d.228.1.1 103834 1bupA 386 83.05 c.55.1.1,c.55.1.1 33377,33378 2eyuA 261 86.18 2cxxA 190 86.35 c.37.1.8 131013 1jj7A 260 86.75 c.37.1.12 63114 1ng1 294 87.56