# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1oe0A	230	0.1240	c.37.1.1	92788
1kagA	173	0.8961	c.37.1.2	72249
2vp4A	230	1.267		
2gzaA	361	2.832		
2an9A	207	4.321	c.37.1.1	127037
2p67A	341	4.868		
5tmpA	213	4.932	c.37.1.1	31931
1in4A	334	5.227	a.4.5.11,c.37.1.20	62597,62598
1vmaA	306	6.648	a.24.13.1,c.37.1.10	108887,108888
2z0hA	197	6.713		
1sq5A	308	6.889	c.37.1.6	105882
1esmA	316	7.174	c.37.1.6	31953
2pbrA	195	7.374		
2ax4A	198	7.432		
1rz3A	201	7.473	c.37.1.6	98132
1s4qA	228	7.518	c.37.1.1	98507
1s8eA	333	8.111	d.159.1.4	105368
1zm7A	230	8.474		
1p9rA	418	8.684	c.37.1.11	94399
1h1nA	305	10.83	c.1.8.3	70855
1ituA	369	10.93	c.1.9.7	71423
2qm8A	337	11.41		
2p5tB	253	11.50		
2qorA	204	12.03		
1kezA	300	12.97	c.69.1.22	68546
2q8pA	260	13.65		
1ukz	203	14.04		
2og2A	359	14.85		
1fj2A	232	14.94	c.69.1.14	34720
1z8fA	228	15.26		
2axpA	173	15.58	c.37.1.1	127497
2ccjA	205	15.62		
1bhgA	613	16.15	b.1.4.1,b.18.1.5,c.1.8.3	22161,23766,28889
2yvuA	186	16.84		
1mnaA	298	17.44	c.69.1.22	79322
3b9qA	302	18.23		
2px0A	296	20.18		
3b9pA	297	20.36		
2r7aA	256	21.00		
1p5zB	263	21.52	c.37.1.1	87815
2ga8A	359	22.97		
1tq6A	413	23.01	c.37.1.8	107202
1mwmA	320	24.89	c.55.1.1,c.55.1.1	79580,79581
1gz0A	253	26.77	c.116.1.1,d.79.3.3	76391,76392
1uj2A	252	28.34	c.37.1.6	99452
2cxxA	190	29.65	c.37.1.8	131013
1assA	159	29.75	c.8.5.2	30818
2qy9A	309	30.02		
1qf9A	194	33.27	c.37.1.1	31848
2pezA	179	34.03		
1gtvA	214	34.61	c.37.1.1	70537
1bif	469	35.65		
1nn5A	215	35.86	c.37.1.1	85892
1axeA	374	36.08	b.35.1.2,c.2.1.1	24681,29697
1in6A	334	36.13	a.4.5.11,c.37.1.20	62601,62602
1j33A	335	36.58	c.39.1.1	77069
1mo2A	294	37.84	c.69.1.22	79331
2b8wA	328	38.08		
2rhmA	193	39.64		
1yzyA	413	39.86	c.146.1.1	124292
2fukA	220	40.45		
1znwA	207	40.62	c.37.1.1	125412
1n2zA	245	41.53	c.92.2.2	79865
1xvlA	321	41.74	c.92.2.2	122380
1yuwA	554	45.94	b.130.1.1,c.55.1.1,c.55.1.1	124070,124071,124072
1br2A	791	47.00	b.34.3.1,c.37.1.9	24558,32155
1s96A	219	47.44	c.37.1.1	98740
2eyuA	261	47.57		
1wx1A	335	47.73		
2jbwA	386	47.92		
2o8nA	265	48.92		
1axgA	374	50.14	b.35.1.2,c.2.1.1	24691,29707
1kdoA	227	50.54	c.37.1.1	68478
1qhsA	178	50.63	c.37.1.3	31938
4tmkA	213	52.19	c.37.1.1	31930
2feaA	236	52.50	c.108.1.20	133327
1t71A	281	54.98	d.159.1.9	112283
2ragA	417	55.08		
3b40A	417	55.70		
1n8kA	374	56.41	b.35.1.2,c.2.1.1	80298,80299
1g6oA	330	57.62	c.37.1.11	32430
1np6A	174	59.57	c.37.1.10	85954
1njgA	250	59.74	c.37.1.20	85785
1dciA	275	60.20	c.14.1.3	30918
1woqA	267	60.64	c.55.1.10,c.55.1.10	109462,109463
1edtA	271	61.41	c.1.8.5	28993
2ebn	289	61.98		
1ee2A	373	62.13	b.35.1.2,c.2.1.1	24663,29679
1uf3A	228	63.35	d.159.1.6	99317
1kay	381	64.15		
2etvA	346	65.07	c.92.2.4	132372
1lvk	762	65.21		
3bifA	468	66.80	c.37.1.7,c.60.1.4	31962,34008
3c8uA	208	67.53		
1lv7A	257	68.25	c.37.1.20	78232
2j5gA	263	68.27		
1xwiA	322	68.90		
1wkyA	464	72.57	b.18.1.31,c.1.8.3	120992,120993
1qhxA	178	72.76	c.37.1.3	31936
1y63A	184	73.35	c.37.1.1	116494
1a71A	374	73.92	b.35.1.2,c.2.1.1	24673,29689
2qt1A	207	75.78		
1ipaA	274	76.51	c.116.1.1,d.79.3.3	71254,71255
1bupA	386	78.43	c.55.1.1,c.55.1.1	33377,33378
2a1fA	247	79.86	c.73.1.3	125991
2r8bA	251	80.48		
1ukzA	203	80.83	c.37.1.1	31840
1lkxA	697	81.64	c.37.1.9	73981
1rkbA	173	81.67	c.37.1.1	111854
1e9eA	215	81.91	c.37.1.1	64810
2gt1A	326	83.85		
1bfd	528	83.91		
1o8uA	257	84.97	c.14.1.3	81194
2j41A	207	85.16		
1yrbA	262	85.27	c.37.1.10	123915
1szoA	257	87.09	c.14.1.3	106164
1svjA	156	87.60	d.220.1.1	106049
2akaA	776	88.86		
3b8zA	217	89.37