# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rlmA 271 0.3889 c.108.1.10 111860 1xrjA 261 0.7785 c.37.1.6 122256 2hf2A 283 1.106 2an9A 207 1.875 c.37.1.1 127037 1gky 187 2.107 1ex7A 186 2.758 c.37.1.1 59537 1rkqA 282 2.827 c.108.1.10 97621 1s96A 219 3.209 c.37.1.1 98740 1t6cA 315 4.330 c.55.1.8,c.55.1.8 106558,106559 4tmkA 213 5.258 c.37.1.1 31930 1uj2A 252 6.134 c.37.1.6 99452 1rloA 271 6.202 c.108.1.10 111864 2j6vA 301 7.056 1p5zB 263 7.883 c.37.1.1 87815 1z6gA 218 9.430 1ymqA 261 9.808 c.108.1.10 123707 2ccjA 205 9.98 1gowA 489 10.49 c.1.8.4 28981 2qorA 204 11.66 3be7A 408 11.84 2pezA 179 12.36 2plrA 213 13.75 1uwsA 489 13.88 c.1.8.4 108073 5tmpA 213 14.69 c.37.1.1 31931 1qf9A 194 14.94 c.37.1.1 31848 1s4qA 228 15.80 c.37.1.1 98507 2exrA 524 16.89 1nrwA 288 17.04 c.108.1.10 86128 1t0hB 224 17.11 c.37.1.1 106208 1z8fA 228 17.61 2ax4A 198 18.67 1sur 215 19.92 3cnyA 301 20.49 1kid 203 21.86 2pbrA 195 23.14 1kidA 203 23.75 c.8.5.1 30771 1d8wA 426 23.76 c.1.15.2 29394 2dwuA 276 23.99 3bczA 293 24.96 3cggA 195 25.25 2yvuA 186 25.53 2bdtA 189 25.91 c.37.1.25 128344 1oe0A 230 26.30 c.37.1.1 92788 1wx1A 335 26.77 2hi0A 240 26.89 1kdoA 227 26.92 c.37.1.1 68478 2nvaA 372 27.97 1n2eA 300 28.30 c.26.1.4 85268 2qt1A 207 28.33 2jepA 395 28.67 1zuwA 272 28.73 1tfr 305 29.06 1fc4A 401 29.64 c.67.1.4 59760 1surA 215 31.67 c.26.2.2 31620 1nf2A 268 32.38 c.108.1.10 91849 2hlkA 255 32.55 1y7oA 218 33.69 c.14.1.1 122701 1h4pA 408 33.90 c.1.8.3 90617 1ypxA 375 34.55 2depA 356 34.97 1chmA 401 37.91 c.55.2.1,d.127.1.1 33545,41142 1e9eA 215 38.56 c.37.1.1 64810 1u6zA 513 40.52 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 1n82A 331 41.28 c.1.8.3 91703 2rbkA 261 41.58 1w4xA 542 41.80 c.3.1.5,c.3.1.5 109171,109172 1oycA 400 41.92 c.1.4.1 28603 1e4iA 447 42.74 c.1.8.4 59225 1tr1A 447 43.49 c.1.8.4 28957 1l1eA 287 45.22 c.66.1.18 73454 2axpA 173 46.18 c.37.1.1 127497 1znwA 207 48.79 c.37.1.1 125412 1zjaA 557 50.05 3b4uA 294 50.37 1j33A 335 50.84 c.39.1.1 77069 2o14A 375 53.78 2ps2A 371 54.58 1yzyA 413 55.15 c.146.1.1 124292 1kpgA 287 55.22 c.66.1.18 68735 2p5tB 253 55.23 2b30A 301 56.15 c.108.1.10 127759 2pceA 386 56.37 1wd5A 208 57.06 c.61.1.1 114524 1qr6A 584 57.30 c.2.1.7,c.58.1.3 30293,33941 2aw5A 541 59.47 2feaA 236 62.80 c.108.1.20 133327 1fsz 372 63.15 1kp8A 547 65.62 a.129.1.1,c.8.5.1,d.56.1.1 84414,84415,84416 2hhcA 330 65.87 2fk8A 318 65.96 c.66.1.18 133648 1mgpA 313 66.09 c.119.1.1 79098 1bam 213 67.01 2gzaA 361 67.17 1r85A 379 67.59 c.1.8.3 104839 1a0pA 290 69.13 a.60.9.1,d.163.1.1 18105,42165 2c3zA 222 70.99 2q09A 416 71.22 1knqA 175 72.84 c.37.1.17 72786 1y1nA 291 73.68 2q5cA 196 74.25 1de5A 426 76.14 c.1.15.2 29402 2vq3A 215 77.50 1iqpA 327 77.52 a.80.1.1,c.37.1.20 62649,62650 1br2A 791 78.02 b.34.3.1,c.37.1.9 24558,32155 2f2aB 483 78.75 a.182.1.2,d.128.1.5 132802,132803 2q4wA 524 80.13 1yaaA 412 80.56 c.67.1.1 34280 2f7tA 227 81.92 1vyrA 364 82.35 c.1.4.1 108906 3ciwA 348 82.75 1vypX 364 84.79 c.1.4.1 108905 2abbA 364 84.89 c.1.4.1 126517 2a84A 300 86.64 c.26.1.4 126389 1ceoA 343 87.43 c.1.8.3 28808 1lwjA 441 88.72 b.71.1.1,c.1.8.1 74303,74304