# List of top-scoring protein chains for T0421.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1s96A 219 1.86e-08 c.37.1.1 98740 2an9A 207 2.50e-08 c.37.1.1 127037 2j41A 207 1.05e-07 1s4qA 228 5.75e-06 c.37.1.1 98507 1ex7A 186 5.76e-06 c.37.1.1 59537 1znwA 207 5.96e-06 c.37.1.1 125412 1z8fA 228 9.81e-06 2ccgA 225 1.52e-05 1lvgA 198 1.67e-05 c.37.1.1 78242 2ccjA 205 1.84e-05 2z0hA 197 3.26e-05 2qorA 204 8.54e-05 2pbrA 195 8.98e-05 4tmkA 213 0.000267 c.37.1.1 31930 1z6gA 218 0.000319 2plrA 213 0.002403 1e9fA 217 0.003113 c.37.1.1 64811 1e9eA 215 0.01683 c.37.1.1 64810 1e98A 215 0.02089 c.37.1.1 64804 1nn5A 215 0.02119 c.37.1.1 85892 1nmyA 209 0.02428 c.37.1.1 85883 1ukzA 203 0.03003 c.37.1.1 31840 1gtvA 214 0.07974 c.37.1.1 70537 1qf9A 194 0.2672 c.37.1.1 31848 2rgxA 206 0.3210 3tmkA 216 0.3719 c.37.1.1 31920 3adkA 194 0.5372 c.37.1.1 31885 2jasA 206 0.5608 2bwjA 199 0.5618 2jaqA 205 0.5864 2cdnA 201 0.7303 c.37.1.1 130289 2c95A 196 0.7480 2axpA 173 0.8808 c.37.1.1 127497 2femA 227 0.9818 2bbwA 246 1.002 1kdoA 227 1.005 c.37.1.1 68478 2qt1A 207 1.187 1p4sA 181 1.227 c.37.1.1 94117 1tevA 196 1.374 c.37.1.1 106817 2qg6A 199 1.376 1zm7A 230 1.435 1ckeA 227 1.495 c.37.1.1 31846 1kjwA 295 1.547 b.34.2.1,c.37.1.1 68643,68644 1jxmA 301 1.558 b.34.2.1,c.37.1.1 67420,67421 2ixeA 271 1.614 2ixfA 271 1.615 2ixgA 271 1.647 2vp4A 230 1.707 2vp0A 250 1.709 2jcsA 230 1.950 3b9qA 302 2.350 2og2A 359 2.458 1qzxA 440 2.476 a.24.13.1,a.36.1.1,c.37.1.10 96711,96712,96713 2qm8A 337 2.539 1akeA 214 2.698 c.37.1.1,g.41.2.1 31905,45185 1ftsA 295 2.767 a.24.13.1,c.37.1.10 16968,32279 2ocpA 241 2.820 c.37.1.1 139012 2qy9A 309 2.829 2ga8A 359 3.526 1jj7A 260 3.666 c.37.1.12 63114 2yvuA 186 3.791 1zakA 222 3.801 c.37.1.1,g.41.2.1 31913,45202 2pjzA 263 4.349 2c9yA 242 4.437 2gksA 546 4.615 2gaoA 208 5.107 c.37.1.8 134891 3c8uA 208 5.167 2yz2A 266 5.666 2ffaA 247 5.669 1xefA 241 5.764 2ff7A 247 5.824 c.37.1.12 133377 1mt0A 241 5.938 c.37.1.12 85096 2pmkA 243 5.949 2h92A 219 5.982 2j37W 504 6.118 2ffbA 247 6.145 1ofhA 310 6.402 c.37.1.20 86948 1qhxA 178 6.440 c.37.1.3 31936 2osbA 216 6.636 1xzpA 482 6.803 a.24.25.1,c.37.1.8,d.250.1.2 116254,116255,116256 2eu8A 216 6.943 2qajA 217 6.963 2p3sA 217 6.969 1p3jA 217 7.082 c.37.1.1,g.41.2.1 94022,94023 1lkxA 697 7.299 c.37.1.9 73981 1kgdA 180 7.318 c.37.1.1 68582 2oriA 216 7.345 2oo7A 217 7.383 1rz3A 201 7.674 c.37.1.6 98132 1gajA 257 7.678 c.37.1.12 60416 1y63A 184 7.681 c.37.1.1 116494 1mr3F 181 7.724 c.37.1.8 79422 1mv5A 243 7.748 c.37.1.12 91469 1akyA 220 7.754 c.37.1.1,g.41.2.1 31896,45197 3akyA 220 7.863 c.37.1.1,g.41.2.1 31898,45199 1zp6A 191 7.900 c.37.1.25 125456 1rj9A 304 7.918 a.24.13.1,c.37.1.10 97553,97554 1ak2A 233 8.052 c.37.1.1,g.41.2.1 31894,45195 2qrnA 280 8.127 2gszA 363 8.195 1g6hA 257 8.255 c.37.1.12 60318 1e4vA 214 8.383 c.37.1.1,g.41.2.1 31903,45183 2ewvA 372 8.667 3be4A 217 8.747 1p5zB 263 8.811 c.37.1.1 87815 2a30A 248 8.945 2v3cC 432 8.964 1sgwA 214 9.023 c.37.1.12 105541 2eyuA 261 9.518 1z47A 355 9.754 2fa9A 189 10.09 1f6bA 198 10.11 c.37.1.8 64986 2yv5A 302 10.40 1ji0A 240 10.41 c.37.1.12 71665 3b5jA 243 10.43 2fmxA 195 10.88 c.37.1.8 133796 2j7pD 283 11.69 a.24.13.1,c.37.1.10 138123,138124 2iylD 284 11.71 a.24.13.1,c.37.1.10 137801,137802 1f3oA 235 11.89 c.37.1.12 59631 1vciA 373 12.11 b.40.6.3,b.40.6.3,c.37.1.12 113607,113608,113609 2q9cA 304 12.12 1okkD 303 12.12 a.24.13.1,c.37.1.10 93261,93262 1g9xA 257 12.18 c.37.1.12 76219 2bboA 291 12.20 1v43A 372 12.20 b.40.6.3,b.40.6.3,c.37.1.12 113521,113522,113523 2cxxA 190 12.62 c.37.1.8 131013 2iw3A 986 12.68 2ix8A 976 12.71 1xmjA 290 12.80 c.37.1.12 115494 2zi3A 279 12.87 2no7A 280 12.88 1l2tA 235 12.91 c.37.1.12 73514 2zi6A 279 12.96 1njgA 250 13.27 c.37.1.20 85785 1dvrA 220 14.27 c.37.1.1,g.41.2.1 31899,45200 2f1rA 171 14.31 1xmiA 291 14.34 c.37.1.12 115489 2bbtA 290 14.38 1mozA 183 14.52 c.37.1.8 79368 1vplA 256 14.67 c.37.1.12 113966 2qp9X 355 14.87 1kagA 173 15.14 c.37.1.2 72249 2bbsA 290 15.53 1s3gA 217 15.89 c.37.1.1,g.41.2.1 98433,98434 2p5tB 253 17.91 2pt7A 330 18.77 1g41A 444 19.10 c.37.1.20 32450 2bdtA 189 19.48 c.37.1.25 128344 2bifA 469 19.54 c.37.1.7,c.60.1.4 31963,34009 1bifA 469 19.64 c.37.1.7,c.60.1.4 31961,34003 3bifA 468 19.75 c.37.1.7,c.60.1.4 31962,34008 2pzgA 241 20.53 1xxiB 368 21.34 a.80.1.1,c.37.1.20 116185,116186 1jr3A 373 21.38 a.80.1.1,c.37.1.20 63245,63246 2pzeA 229 22.02 2d2eA 250 22.06 2ak3A 226 22.43 c.37.1.1,g.41.2.1 31892,45193 1j8mF 297 22.45 a.24.13.1,c.37.1.10 62742,62743 1uj2A 252 23.30 c.37.1.6 99452 1yqtA 538 23.34 1xrjA 261 23.56 c.37.1.6 122256 2pzfA 228 23.68 1vhtA 218 24.06 c.37.1.1 100700 2rkoA 331 24.34 2gzaA 361 24.66 1e4yA 214 24.98 c.37.1.1,g.41.2.1 31901,45181 1np6A 174 26.92 c.37.1.10 85954 1n3bA 216 27.91 c.37.1.1 79959 1t3hA 214 27.94 c.37.1.1 99117 1zinA 217 28.06 c.37.1.1,g.41.2.1 31915,45178 1r8qA 181 28.21 c.37.1.8 97243 2nq2C 253 28.63 1p9nA 170 28.76 c.37.1.10 87997 1hurA 180 28.90 c.37.1.8 32052 2iyvA 184 29.16 c.37.1.2 137812 2g1kA 176 29.56 c.37.1.2 134519 2j289 430 31.00 1jjvA 206 31.03 c.37.1.1 71698 1uptA 171 31.18 c.37.1.8 99767 2ihyA 279 32.18 1h65A 270 33.28 c.37.1.8 65640 2i3bA 189 33.49 1vmaA 306 33.62 a.24.13.1,c.37.1.10 108887,108888 2ghiA 260 34.25 2oljA 263 35.49 2cbzA 237 35.52 1ihuA 589 35.57 c.37.1.10,c.37.1.10 62394,62395 1r4aA 165 36.90 c.37.1.8 96986 1zd8A 227 37.50 3bb1A 274 37.61 1m2oB 190 38.24 c.37.1.8 78485 2j3eA 249 38.33 1viaA 175 38.79 c.37.1.2 100754 1sxjB 323 38.92 a.80.1.1,c.37.1.20 106083,106084 1rflA 172 38.97 c.37.1.8 97384 2pcjA 224 40.13 3bb3A 262 40.18 3bb4A 262 40.31 1oxsC 353 40.36 b.40.6.3,c.37.1.12 87519,87520 1rkbA 173 40.87 c.37.1.1 111854 2gj8A 172 40.96 c.37.1.8 135270 1p9rA 418 42.51 c.37.1.11 94399 1z6xA 180 42.85 c.37.1.8 124571 2yyzA 359 43.00 1odfA 290 43.29 c.37.1.6 92782 2a5dA 175 46.94 c.37.1.8 126172 1j8yF 297 47.26 a.24.13.1,c.37.1.10 62747,62748 1oxxK 353 47.52 b.40.6.3,c.37.1.12 93715,93716 1e0sA 174 47.69 c.37.1.8 32057 2b6hA 192 48.02 c.37.1.8 127994 2ph1A 262 49.78 2vb6A 788 50.21 2qtvB 167 53.00 2bkiA 858 53.27 2h57A 190 53.35 1m7gA 211 53.79 c.37.1.4 78724 2bkhA 814 54.05 2v26A 784 54.26 2a5gA 175 54.87 c.37.1.8 126174 1gvnB 287 57.59 c.37.1.21 76354 1nksA 194 57.88 c.37.1.1 31886 1u0lA 301 58.95 b.40.4.5,c.37.1.8 107551,107552 3bk7A 607 59.17 1r8sA 164 60.22 c.37.1.8 97247 1iy2A 278 60.39 c.37.1.20 76941 1o3yA 166 61.00 c.37.1.8 86618 1in7A 334 66.14 a.4.5.11,c.37.1.20 62603,62604 1svmA 377 69.05 c.37.1.20 112126 1j7kA 334 69.07 a.4.5.11,c.37.1.20 62695,62696 2h1lA 370 69.33 c.37.1.20 135947 1n25A 368 69.42 c.37.1.20 85264 2hydA 578 69.98 c.37.1.12,f.37.1.1 136875,136876 2e87A 357 70.00 2dhrA 499 70.10 2qagC 418 70.63 1zuhA 168 70.74 1ixzA 254 71.74 c.37.1.20 76938 1in5A 334 72.28 a.4.5.11,c.37.1.20 62599,62600 2pt5A 168 73.81 2p67A 341 73.98 2r6gA 381 74.03 1q1bA 381 74.08 b.40.6.3,c.37.1.12 95562,95563 2awnA 381 74.08 b.40.6.3,c.37.1.12 127459,127460 1in8A 334 75.34 a.4.5.11,c.37.1.20 62605,62606 1in4A 334 75.40 a.4.5.11,c.37.1.20 62597,62598 2grjA 192 76.05 2rcnA 358 83.31 1e94E 449 83.40 c.37.1.20 32442 2qi9C 249 83.65 1lvkA 762 84.93 b.34.3.1,c.37.1.9 24576,32173 1fzqA 181 85.85 c.37.1.8 32060 1l7vC 249 86.44 c.37.1.12 73674 1g4aE 443 89.61 c.37.1.20 32444 2r6fA 972 89.70