# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gky 187 1.11e-06 1kjwA 295 1.22e-06 b.34.2.1,c.37.1.1 68643,68644 2pbrA 195 1.41e-06 2j41A 207 2.45e-06 1ex7A 186 3.02e-06 c.37.1.1 59537 2qorA 204 3.22e-06 1kgdA 180 5.34e-06 c.37.1.1 68582 1znwA 207 7.52e-06 c.37.1.1 125412 4tmkA 213 2.04e-05 c.37.1.1 31930 1p5zB 263 2.45e-05 c.37.1.1 87815 1p6xA 334 2.46e-05 c.37.1.1 94195 2z0hA 197 3.23e-05 2ccjA 205 4.54e-05 1gtvA 214 7.85e-05 c.37.1.1 70537 2vp4A 230 0.000109 1ki9A 192 0.000133 c.37.1.1 84404 2an9A 207 0.000173 c.37.1.1 127037 1of1A 376 0.000184 c.37.1.1 103924 1e2kA 331 0.000187 c.37.1.1 31854 2c95A 196 0.000199 1qf9A 194 0.000257 c.37.1.1 31848 1khtA 192 0.000353 c.37.1.1 84401 1t0hB 224 0.000425 c.37.1.1 106208 2bwjA 199 0.000550 1ukzA 203 0.000575 c.37.1.1 31840 1s96A 219 0.000617 c.37.1.1 98740 2cdnA 201 0.000879 c.37.1.1 130289 1zm7A 230 0.000932 2qt1A 207 0.001071 2axpA 173 0.001518 c.37.1.1 127497 2yvuA 186 0.001679 1qhxA 178 0.002262 c.37.1.3 31936 2plrA 213 0.002312 1ukz 203 0.002534 2bdtA 189 0.003244 c.37.1.25 128344 2pezA 179 0.003866 2rhmA 193 0.004985 1knqA 175 0.007256 c.37.1.17 72786 2rgxA 206 0.008025 1akyA 220 0.008147 c.37.1.1,g.41.2.1 31896,45197 1y63A 184 0.008420 c.37.1.1 116494 1e4yA 214 0.01054 c.37.1.1,g.41.2.1 31901,45181 3tmkA 216 0.01294 c.37.1.1 31920 2f6rA 281 0.01567 1ak2A 233 0.01571 c.37.1.1,g.41.2.1 31894,45195 1ly1A 181 0.01595 c.37.1.1 74334 1ltqA 301 0.01701 c.108.1.9,c.37.1.1 78208,78209 1vhtA 218 0.01732 c.37.1.1 100700 2ak3A 226 0.01987 c.37.1.1,g.41.2.1 31892,45193 1zin 217 0.02087 2pt5A 168 0.02103 3be4A 217 0.02157 3c8uA 208 0.02336 1viaA 175 0.02798 c.37.1.2 100754 2iyvA 184 0.03375 c.37.1.2 137812 1rz3A 201 0.03379 c.37.1.6 98132 1gvnB 287 0.03738 c.37.1.21 76354 1uj2A 252 0.03778 c.37.1.6 99452 1e6cA 173 0.05061 c.37.1.2 59296 1nn5A 215 0.05350 c.37.1.1 85892 1xrjA 261 0.05485 c.37.1.6 122256 2ax4A 198 0.05517 1rkbA 173 0.05543 c.37.1.1 111854 2g1kA 176 0.06083 c.37.1.2 134519 1zd8A 227 0.06159 1kdoA 227 0.06460 c.37.1.1 68478 2eu8A 216 0.06522 2qgnA 322 0.06943 1m7gA 211 0.07283 c.37.1.4 78724 1zinA 217 0.07633 c.37.1.1,g.41.2.1 31915,45178 2p5tB 253 0.09264 3crrA 323 0.09709 1ckeA 227 0.1013 c.37.1.1 31846 1zuhA 168 0.1419 2gzaA 361 0.1565 2grjA 192 0.1789 1a7jA 290 0.3608 c.37.1.6 31952 1jjvA 206 0.4002 c.37.1.1 71698 1xjcA 169 0.4054 c.37.1.10 115387 1kagA 173 0.4180 c.37.1.2 72249 1np6A 174 0.5925 c.37.1.10 85954 2f1rA 171 0.6128 1in4A 334 0.6384 a.4.5.11,c.37.1.20 62597,62598 2p67A 341 0.6458 1in6A 334 0.7485 a.4.5.11,c.37.1.20 62601,62602 1tq4A 413 0.9299 c.37.1.8 107201 1xx6A 191 0.9373 c.37.1.24,g.39.1.14 116139,116140 1sq5A 308 0.9916 c.37.1.6 105882 1l2tA 235 1.062 c.37.1.12 73514 2oap1 511 1.070 1g6oA 330 1.097 c.37.1.11 32430 1bifA 469 1.108 c.37.1.7,c.60.1.4 31961,34003 1bif 469 1.128 2qy9A 309 1.171 2pt7A 330 1.259 2qm8A 337 1.378 2pzeA 229 1.396 3b9qA 302 1.450 1x6vA 630 1.456 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2eyuA 261 1.527 1d2nA 272 1.626 c.37.1.20 32428 1lv7A 257 1.703 c.37.1.20 78232 2orwA 184 1.712 2ff7A 247 1.797 c.37.1.12 133377 2bbsA 290 1.813 2pmkA 243 1.885 2ixeA 271 1.974 2ze7A 253 2.061 2cbzA 237 2.078 2a5yB 549 2.218 1njgA 250 2.226 c.37.1.20 85785 1zu4A 320 2.271 2hf9A 226 2.349 2bjvA 265 2.447 1rj9A 304 2.462 a.24.13.1,c.37.1.10 97553,97554 1a7j 290 2.585 2og2A 359 2.620 2ihyA 279 2.649 1htwA 158 2.897 c.37.1.18 71083 1z47A 355 3.024 1w44A 331 3.093 c.37.1.11 114147 2nq2C 253 3.161 2qgzA 308 3.214 1ji0A 240 3.280 c.37.1.12 71665 1ye8A 178 3.321 c.37.1.11 123010 1xewX 182 3.541 c.37.1.12 115235 2it1A 362 3.629 1g291 372 3.684 1b0uA 262 3.720 c.37.1.12 32370 1n2zA 245 3.733 c.92.2.2 79865 2gxaA 274 3.846 2vhjA 331 4.128 1vplA 256 4.339 c.37.1.12 113966 2pcjA 224 4.425 1tca 317 4.609 2c9oA 456 4.936 1oxxK 353 5.044 b.40.6.3,c.37.1.12 93715,93716 2fnaA 357 5.091 a.4.5.11,c.37.1.20 133809,133810 1tueA 212 5.208 c.37.1.20 107323 1g8pA 350 5.239 c.37.1.20 60376 1gl6A 436 5.427 c.37.1.11 70259 1nijA 318 5.634 c.37.1.10,d.237.1.1 85741,85742 1sxjA 511 5.749 a.80.1.1,c.37.1.20 106081,106082 2d2eA 250 5.840 1n4aA 252 5.914 c.92.2.2 85317 1sxjE 354 5.983 a.80.1.1,c.37.1.20 106089,106090 1odfA 290 6.021 c.37.1.6 92782 2j69A 695 6.224 1sgwA 214 6.251 c.37.1.12 105541 1a5tA 334 6.555 a.80.1.1,c.37.1.20 18450,32423 1pujA 282 7.217 c.37.1.8 88294 1g6hA 257 8.311 c.37.1.12 60318 2v26A 784 8.483 1sxjC 340 8.552 a.80.1.1,c.37.1.20 106085,106086 2qi9C 249 9.460 2dkhA 639 9.554 1t9hA 307 9.855 b.40.4.5,c.37.1.8 112358,112359 2bkhA 814 10.01 1ls1A 295 10.11 a.24.13.1,c.37.1.10 78170,78171 1ky3A 182 10.66 c.37.1.8 73193 2r2aA 199 10.73 1w7jA 795 11.07 b.34.3.1,c.37.1.9 120688,120689 2r44A 331 11.41 1fnnA 389 11.75 a.4.5.11,c.37.1.20 16129,32426 1h65A 270 11.89 c.37.1.8 65640 1w5tA 412 11.97 a.4.5.11,c.37.1.20 114255,114256 1e9rA 437 12.29 c.37.1.11 64827 2akaB 299 12.43 c.37.1.8 126914 1w9iA 770 12.49 2o2gA 223 12.85 2o5vA 359 12.89 1dekA 241 13.29 c.37.1.1 31842 1vmaA 306 13.29 a.24.13.1,c.37.1.10 108887,108888 3c5cA 187 14.10 1f6bA 198 14.72 c.37.1.8 64986 1u0jA 267 14.90 c.37.1.20 107546 2hxsA 178 15.88 2q3hA 201 16.91 1a5t 334 17.14 2pjzA 263 17.22 1knxA 312 17.52 c.98.2.1,c.91.1.2 77459,77460 1u94A 356 17.70 c.37.1.11,d.48.1.1 107743,107744 2ga8A 359 18.52 3bs4A 260 19.73 2bonA 332 20.61 3bosA 242 20.62 1mh1A 186 21.49 c.37.1.8 32002 3bwdD 182 21.59 2gcoA 201 22.67 2chgA 226 23.00 2qjwA 176 23.56 1ko7A 314 24.00 c.98.2.1,c.91.1.2 72797,72798 2zadA 345 24.23 1ionA 243 24.33 c.37.1.10 62633 1w4rA 195 25.72 1j8mF 297 25.85 a.24.13.1,c.37.1.10 62742,62743 2rexB 197 26.15 2hjgA 436 26.58 1zj6A 187 28.48 c.37.1.8 125145 1svmA 377 28.61 c.37.1.20 112126 2iutA 574 29.48 1bu8A 452 30.01 b.12.1.2,c.69.1.19 23647,34795 1g3qA 237 30.29 c.37.1.10 60237 2zejA 184 30.52 1m7bA 184 31.78 c.37.1.8 74572 1kidA 203 32.10 c.8.5.1 30771 2g6bA 180 32.40 c.37.1.8 134701 1z08A 170 34.21 c.37.1.8 124303 1jmkC 230 34.64 c.69.1.22 71747 2qmoA 220 35.14 1ihuA 589 35.56 c.37.1.10,c.37.1.10 62394,62395 2p5sA 199 36.60 2hu5A 582 37.48 b.69.7.2,c.69.1.33 136763,136764 1vf8A 377 37.56 c.1.8.5,d.26.3.1 120029,120030 2etvA 346 37.76 c.92.2.4 132372 3bfkA 181 38.38 2r3sA 335 39.91 1tuoA 464 40.63 1nofA 383 40.69 b.71.1.2,c.1.8.3 92020,92021 1xp8A 366 41.79 c.37.1.11,d.48.1.1 115735,115736 2rebA 352 42.06 c.37.1.11,d.48.1.1 32282,38767 1jbkA 195 42.09 c.37.1.20 71631 1xtpA 254 42.57 c.66.1.42 116031 2bekA 257 42.81 2ozeA 298 42.86 2b8wA 328 43.23 1efdN 266 43.34 c.92.2.1 35597 3b9pA 297 43.64 2q8pA 260 44.68 1ufoA 238 46.46 c.69.1.27 99344 3c4vA 426 46.52 1cp2A 269 46.68 c.37.1.10 32269 2chuA 296 46.87 c.92.2.4 130485 2yv5A 302 49.17 2gjsA 176 51.27 c.37.1.8 135287 1g41A 444 52.89 c.37.1.20 32450 1f2tA 149 53.15 c.37.1.12 32373 2b7aA 293 55.06 1nlfA 279 55.09 c.37.1.11 85850 2b8tA 223 55.30 c.37.1.24,g.39.1.14 128109,128110 1l1eA 287 56.26 c.66.1.18 73454 2h17A 181 56.57 2cvhA 220 57.28 1cr1A 296 58.39 c.37.1.11 32286 1kid 203 58.85 1yqtA 538 60.24 2fdxA 138 60.26 c.23.5.1 31192 2p65A 187 60.43 1e5kA 201 61.20 c.68.1.8 34578 1hplA 449 61.23 b.12.1.2,c.69.1.19 23639,34787 1kngA 156 62.76 c.47.1.10 72777 1pswA 348 64.37 c.87.1.7 88287 2aebA 322 65.04 c.42.1.1 126617 2bm8A 236 66.59 c.66.1.50 128771 1e8cA 498 67.09 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2dpxA 174 67.46 1zczA 464 69.12 c.24.1.3,c.97.1.4 124923,124924 2oblA 347 70.01 1sznA 417 70.53 b.71.1.1,c.1.8.1 106162,106163 1tcaA 317 71.40 c.69.1.17 34726 3bkxA 275 72.27 2jcbA 200 72.89 2gpyA 233 74.81 2hcyA 347 74.98 2a5dA 175 75.00 c.37.1.8 126172 2r7aA 256 75.50 1b6g 310 76.54 2fz4A 237 78.08 c.37.1.19 134419 1srvA 145 80.65 c.8.5.1 30817 1z06A 189 82.05 c.37.1.8 124301 2c8vA 288 82.33 c.37.1.10 130128 2r6fA 972 84.34 1x3sA 195 84.65 c.37.1.8 121670 2dpyA 438 84.87 1bg2 325 85.13 2p6pA 384 85.42 1vcoA 550 87.63 c.23.16.1,c.37.1.10 108508,108509 1oi7A 288 88.62 c.2.1.8,c.23.4.1 87049,87050 1m1zA 513 89.65 c.26.2.1,d.153.1.1 78457,78458