# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 7.73e-07 1gky 187 1.00e-06 1kjwA 295 1.35e-06 b.34.2.1,c.37.1.1 68643,68644 2qorA 204 2.80e-06 2j41A 207 3.00e-06 1ex7A 186 3.67e-06 c.37.1.1 59537 1kgdA 180 4.45e-06 c.37.1.1 68582 1znwA 207 9.05e-06 c.37.1.1 125412 1p5zB 263 1.65e-05 c.37.1.1 87815 1p6xA 334 1.98e-05 c.37.1.1 94195 4tmkA 213 2.27e-05 c.37.1.1 31930 2ccjA 205 2.29e-05 2z0hA 197 2.37e-05 2vp4A 230 6.49e-05 1ki9A 192 7.19e-05 c.37.1.1 84404 2c95A 196 0.000124 1qf9A 194 0.000168 c.37.1.1 31848 1gtvA 214 0.000204 c.37.1.1 70537 1of1A 376 0.000205 c.37.1.1 103924 1ukzA 203 0.000222 c.37.1.1 31840 1khtA 192 0.000227 c.37.1.1 84401 1e2kA 331 0.000247 c.37.1.1 31854 2an9A 207 0.000267 c.37.1.1 127037 2bwjA 199 0.000492 2cdnA 201 0.000499 c.37.1.1 130289 2qt1A 207 0.000645 1zm7A 230 0.000648 1s96A 219 0.000713 c.37.1.1 98740 1t0hB 224 0.000853 c.37.1.1 106208 1ukz 203 0.000873 2bdtA 189 0.001395 c.37.1.25 128344 2axpA 173 0.001752 c.37.1.1 127497 1qhxA 178 0.001779 c.37.1.3 31936 2plrA 213 0.002241 2yvuA 186 0.002994 2rgxA 206 0.004166 2rhmA 193 0.004891 2pezA 179 0.004963 1akyA 220 0.005691 c.37.1.1,g.41.2.1 31896,45197 1y63A 184 0.006259 c.37.1.1 116494 1e4yA 214 0.007598 c.37.1.1,g.41.2.1 31901,45181 1zin 217 0.008224 1knqA 175 0.008327 c.37.1.17 72786 2pt5A 168 0.01096 1ak2A 233 0.01280 c.37.1.1,g.41.2.1 31894,45195 2ak3A 226 0.01323 c.37.1.1,g.41.2.1 31892,45193 1ltqA 301 0.01354 c.108.1.9,c.37.1.1 78208,78209 3be4A 217 0.01619 3tmkA 216 0.01693 c.37.1.1 31920 1ly1A 181 0.02216 c.37.1.1 74334 2f6rA 281 0.02253 1e6cA 173 0.02629 c.37.1.2 59296 1vhtA 218 0.02737 c.37.1.1 100700 1rz3A 201 0.02807 c.37.1.6 98132 3c8uA 208 0.02876 2eu8A 216 0.02965 1viaA 175 0.03594 c.37.1.2 100754 1gvnB 287 0.03924 c.37.1.21 76354 1zinA 217 0.03977 c.37.1.1,g.41.2.1 31915,45178 1zd8A 227 0.04047 1xrjA 261 0.04283 c.37.1.6 122256 2qgnA 322 0.05603 1uj2A 252 0.05650 c.37.1.6 99452 2iyvA 184 0.06261 c.37.1.2 137812 1nn5A 215 0.06638 c.37.1.1 85892 3crrA 323 0.06810 2ax4A 198 0.06899 1kdoA 227 0.06919 c.37.1.1 68478 1rkbA 173 0.07931 c.37.1.1 111854 2g1kA 176 0.08688 c.37.1.2 134519 2p5tB 253 0.09501 1zuhA 168 0.1129 1m7gA 211 0.1205 c.37.1.4 78724 1ckeA 227 0.1272 c.37.1.1 31846 2gzaA 361 0.1356 2grjA 192 0.1438 1jjvA 206 0.2931 c.37.1.1 71698 1kagA 173 0.3628 c.37.1.2 72249 1in4A 334 0.4215 a.4.5.11,c.37.1.20 62597,62598 1a7jA 290 0.4550 c.37.1.6 31952 1xjcA 169 0.4909 c.37.1.10 115387 1np6A 174 0.5254 c.37.1.10 85954 1in6A 334 0.6360 a.4.5.11,c.37.1.20 62601,62602 2f1rA 171 0.7468 1bifA 469 0.7651 c.37.1.7,c.60.1.4 31961,34003 1bif 469 0.9008 1xx6A 191 0.9734 c.37.1.24,g.39.1.14 116139,116140 2oap1 511 1.045 2p67A 341 1.060 1g6oA 330 1.132 c.37.1.11 32430 1tq4A 413 1.150 c.37.1.8 107201 2qy9A 309 1.320 2qm8A 337 1.367 1sq5A 308 1.496 c.37.1.6 105882 2pt7A 330 1.501 3b9qA 302 1.529 2a5yB 549 1.778 1rj9A 304 1.826 a.24.13.1,c.37.1.10 97553,97554 2eyuA 261 1.884 2orwA 184 1.939 1xewX 182 1.960 c.37.1.12 115235 2pzeA 229 1.961 2bbsA 290 2.198 1l2tA 235 2.201 c.37.1.12 73514 2ff7A 247 2.227 c.37.1.12 133377 2ze7A 253 2.363 1lv7A 257 2.365 c.37.1.20 78232 1zu4A 320 2.491 1njgA 250 2.580 c.37.1.20 85785 2ixeA 271 2.581 2pmkA 243 2.583 1d2nA 272 2.636 c.37.1.20 32428 2ihyA 279 2.653 1x6vA 630 2.811 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2cbzA 237 2.826 1n2zA 245 2.908 c.92.2.2 79865 1htwA 158 2.990 c.37.1.18 71083 2bjvA 265 3.144 1a7j 290 3.178 2gxaA 274 3.276 2nq2C 253 3.387 2hf9A 226 3.412 1w44A 331 3.679 c.37.1.11 114147 1n4aA 252 3.915 c.92.2.2 85317 1pujA 282 3.973 c.37.1.8 88294 2og2A 359 3.991 1z47A 355 4.055 1ji0A 240 4.181 c.37.1.12 71665 2j69A 695 4.202 2it1A 362 4.305 1g291 372 4.530 1b0uA 262 4.609 c.37.1.12 32370 1nijA 318 4.801 c.37.1.10,d.237.1.1 85741,85742 1sgwA 214 4.967 c.37.1.12 105541 2vhjA 331 5.019 2c9oA 456 5.078 1vplA 256 5.107 c.37.1.12 113966 1sxjA 511 5.159 a.80.1.1,c.37.1.20 106081,106082 2fnaA 357 5.160 a.4.5.11,c.37.1.20 133809,133810 1tca 317 5.494 2qgzA 308 5.748 1ye8A 178 5.860 c.37.1.11 123010 1h65A 270 5.901 c.37.1.8 65640 2pcjA 224 6.650 1dekA 241 6.884 c.37.1.1 31842 1oxxK 353 7.093 b.40.6.3,c.37.1.12 93715,93716 2bkhA 814 7.229 1tueA 212 7.272 c.37.1.20 107323 1g8pA 350 8.019 c.37.1.20 60376 1odfA 290 8.380 c.37.1.6 92782 1gl6A 436 8.446 c.37.1.11 70259 1ky3A 182 8.555 c.37.1.8 73193 1w7jA 795 8.760 b.34.3.1,c.37.1.9 120688,120689 2v26A 784 8.821 2qi9C 249 8.893 2r44A 331 9.082 1ls1A 295 9.207 a.24.13.1,c.37.1.10 78170,78171 1sxjE 354 10.11 a.80.1.1,c.37.1.20 106089,106090 1knxA 312 10.12 c.98.2.1,c.91.1.2 77459,77460 1a5tA 334 10.67 a.80.1.1,c.37.1.20 18450,32423 1e9rA 437 10.68 c.37.1.11 64827 2q3hA 201 10.70 1f6bA 198 10.92 c.37.1.8 64986 1vmaA 306 11.19 a.24.13.1,c.37.1.10 108887,108888 3c5cA 187 11.51 1w9iA 770 11.58 2dkhA 639 11.85 1g6hA 257 12.28 c.37.1.12 60318 1t9hA 307 12.73 b.40.4.5,c.37.1.8 112358,112359 2akaB 299 13.00 c.37.1.8 126914 1sxjC 340 13.02 a.80.1.1,c.37.1.20 106085,106086 2r2aA 199 14.77 2d2eA 250 14.77 2zejA 184 15.30 1g41A 444 15.90 c.37.1.20 32450 2rexB 197 16.05 1mh1A 186 16.30 c.37.1.8 32002 1ko7A 314 16.74 c.98.2.1,c.91.1.2 72797,72798 2o5vA 359 17.17 1u0jA 267 17.27 c.37.1.20 107546 1fnnA 389 17.95 a.4.5.11,c.37.1.20 16129,32426 1m7bA 184 18.13 c.37.1.8 74572 1u94A 356 18.56 c.37.1.11,d.48.1.1 107743,107744 2hxsA 178 19.86 2o2gA 223 20.23 3bwdD 182 20.82 2gcoA 201 20.87 1j8mF 297 21.48 a.24.13.1,c.37.1.10 62742,62743 2pjzA 263 21.57 2ga8A 359 22.11 1w5tA 412 22.94 a.4.5.11,c.37.1.20 114255,114256 2iutA 574 23.49 1zj6A 187 23.79 c.37.1.8 125145 1svmA 377 23.84 c.37.1.20 112126 1z08A 170 24.23 c.37.1.8 124303 2b8wA 328 25.62 1jmkC 230 26.91 c.69.1.22 71747 2hu5A 582 27.05 b.69.7.2,c.69.1.33 136763,136764 2hjgA 436 28.44 2chgA 226 28.45 3bs4A 260 29.35 2ozeA 298 29.64 1vf8A 377 29.65 c.1.8.5,d.26.3.1 120029,120030 1ufoA 238 31.03 c.69.1.27 99344 2q8pA 260 31.76 1f2tA 149 31.86 c.37.1.12 32373 2p5sA 199 33.17 2g6bA 180 34.57 c.37.1.8 134701 3bosA 242 34.79 3bfkA 181 34.81 1ionA 243 35.33 c.37.1.10 62633 2b7aA 293 35.39 2bonA 332 35.89 2h17A 181 36.23 2zadA 345 37.29 1cp2A 269 37.68 c.37.1.10 32269 1kidA 203 38.70 c.8.5.1 30771 2qmoA 220 38.82 2a5dA 175 39.56 c.37.1.8 126172 2fz4A 237 40.76 c.37.1.19 134419 2ip2A 334 40.77 2qjwA 176 41.32 1xp8A 366 42.84 c.37.1.11,d.48.1.1 115735,115736 2etvA 346 43.25 c.92.2.4 132372 1g3qA 237 43.29 c.37.1.10 60237 1tuoA 464 44.38 1jbkA 195 46.88 c.37.1.20 71631 3b9pA 297 47.29 1ju2A 536 48.15 c.3.1.2,d.16.1.1 77169,77170 1nofA 383 49.18 b.71.1.2,c.1.8.3 92020,92021 2dpyA 438 50.15 1w4rA 195 50.39 2bekA 257 50.66 2gjsA 176 51.80 c.37.1.8 135287 1a5t 334 52.76 2oblA 347 54.31 1im8A 244 54.67 c.66.1.14 66212 1z06A 189 54.87 c.37.1.8 124301 2ebn 289 54.88 1kngA 156 54.98 c.47.1.10 72777 1gg4A 452 55.50 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 2r6fA 972 56.31 2dpxA 174 57.14 1xtpA 254 57.67 c.66.1.42 116031 3co5A 143 58.39 2yv5A 302 59.23 1pswA 348 60.00 c.87.1.7 88287 1wmsA 177 62.09 c.37.1.8 109414 2rebA 352 62.69 c.37.1.11,d.48.1.1 32282,38767 2am1A 454 63.32 2c8vA 288 63.47 c.37.1.10 130128 1bu8A 452 64.56 b.12.1.2,c.69.1.19 23647,34795 2aebA 322 64.84 c.42.1.1 126617 1e8cA 498 66.86 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2fdxA 138 67.03 c.23.5.1 31192 2hcyA 347 67.70 2chuA 296 67.87 c.92.2.4 130485 2p65A 187 68.74 2cvhA 220 69.62 1kmqA 184 69.98 c.37.1.8 84412 1kid 203 70.13 2r7aA 256 72.71 2dkaA 544 72.85 1zczA 464 73.53 c.24.1.3,c.97.1.4 124923,124924 1ihuA 589 75.06 c.37.1.10,c.37.1.10 62394,62395 1efdN 266 75.10 c.92.2.1 35597 1sznA 417 75.57 b.71.1.1,c.1.8.1 106162,106163 1r8sA 164 75.64 c.37.1.8 97247 1oi7A 288 76.37 c.2.1.8,c.23.4.1 87049,87050 2bmeA 186 81.48 c.37.1.8 128790 1m1zA 513 81.66 c.26.2.1,d.153.1.1 78457,78458 2r79A 283 82.22 2avdA 219 82.31 c.66.1.1 127377 1crzA 403 82.32 b.68.4.1,c.51.2.1 27629,33211 3bkxA 275 83.02 1kshA 186 84.85 c.37.1.8 72914 2jcbA 200 85.41 1tcaA 317 86.40 c.69.1.17 34726 2b8tA 223 86.61 c.37.1.24,g.39.1.14 128109,128110 1o3yA 166 88.88 c.37.1.8 86618