# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 8.65e-07 1kjwA 295 1.79e-06 b.34.2.1,c.37.1.1 68643,68644 1gky 187 2.21e-06 2j41A 207 6.06e-06 2qorA 204 6.45e-06 1ex7A 186 6.46e-06 c.37.1.1 59537 1kgdA 180 8.72e-06 c.37.1.1 68582 4tmkA 213 1.27e-05 c.37.1.1 31930 1znwA 207 1.62e-05 c.37.1.1 125412 1p5zB 263 1.81e-05 c.37.1.1 87815 2ccjA 205 2.84e-05 2z0hA 197 3.33e-05 1p6xA 334 5.36e-05 c.37.1.1 94195 1gtvA 214 6.46e-05 c.37.1.1 70537 1ki9A 192 0.000145 c.37.1.1 84404 2vp4A 230 0.000208 1khtA 192 0.000280 c.37.1.1 84401 2c95A 196 0.000318 2an9A 207 0.000346 c.37.1.1 127037 1of1A 376 0.000388 c.37.1.1 103924 1ukzA 203 0.000518 c.37.1.1 31840 1qf9A 194 0.000554 c.37.1.1 31848 1t0hB 224 0.000595 c.37.1.1 106208 1e2kA 331 0.000639 c.37.1.1 31854 1s96A 219 0.000682 c.37.1.1 98740 2bwjA 199 0.000744 2plrA 213 0.000959 2yvuA 186 0.001392 2bdtA 189 0.001514 c.37.1.25 128344 2pezA 179 0.001735 2cdnA 201 0.001944 c.37.1.1 130289 2qt1A 207 0.002128 1ukz 203 0.002338 2axpA 173 0.002493 c.37.1.1 127497 1qhxA 178 0.002648 c.37.1.3 31936 1zm7A 230 0.002908 2rhmA 193 0.003291 1e4yA 214 0.004643 c.37.1.1,g.41.2.1 31901,45181 1knqA 175 0.006570 c.37.1.17 72786 3be4A 217 0.007084 2rgxA 206 0.008194 1akyA 220 0.008341 c.37.1.1,g.41.2.1 31896,45197 2ak3A 226 0.008811 c.37.1.1,g.41.2.1 31892,45193 1ak2A 233 0.008967 c.37.1.1,g.41.2.1 31894,45195 3tmkA 216 0.009191 c.37.1.1 31920 1zin 217 0.01178 1y63A 184 0.01329 c.37.1.1 116494 1e6cA 173 0.01364 c.37.1.2 59296 1gvnB 287 0.01588 c.37.1.21 76354 1ltqA 301 0.01993 c.108.1.9,c.37.1.1 78208,78209 2eu8A 216 0.02037 2pt5A 168 0.02049 2f6rA 281 0.02359 1vhtA 218 0.02477 c.37.1.1 100700 1zinA 217 0.02673 c.37.1.1,g.41.2.1 31915,45178 1uj2A 252 0.02717 c.37.1.6 99452 1zd8A 227 0.03004 1nn5A 215 0.03140 c.37.1.1 85892 1xrjA 261 0.03433 c.37.1.6 122256 2ax4A 198 0.03439 1ly1A 181 0.03534 c.37.1.1 74334 3c8uA 208 0.03554 2iyvA 184 0.04257 c.37.1.2 137812 1kdoA 227 0.04321 c.37.1.1 68478 1m7gA 211 0.05398 c.37.1.4 78724 1viaA 175 0.05724 c.37.1.2 100754 2p5tB 253 0.06771 1rkbA 173 0.06827 c.37.1.1 111854 2qgnA 322 0.07646 3crrA 323 0.08252 1ckeA 227 0.09747 c.37.1.1 31846 2g1kA 176 0.1016 c.37.1.2 134519 1rz3A 201 0.1135 c.37.1.6 98132 2grjA 192 0.1439 1jjvA 206 0.1831 c.37.1.1 71698 1zuhA 168 0.2025 2gzaA 361 0.2137 1xx6A 191 0.3454 c.37.1.24,g.39.1.14 116139,116140 2f1rA 171 0.3636 1np6A 174 0.3734 c.37.1.10 85954 1a7jA 290 0.4319 c.37.1.6 31952 1kagA 173 0.4847 c.37.1.2 72249 1xjcA 169 0.5001 c.37.1.10 115387 2qm8A 337 0.5543 1in6A 334 0.6736 a.4.5.11,c.37.1.20 62601,62602 1in4A 334 0.7408 a.4.5.11,c.37.1.20 62597,62598 2p67A 341 0.7624 1x6vA 630 0.8169 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1g6oA 330 0.8528 c.37.1.11 32430 1bifA 469 0.8864 c.37.1.7,c.60.1.4 31961,34003 1l2tA 235 0.9223 c.37.1.12 73514 1bif 469 0.9287 2pt7A 330 0.9550 2orwA 184 0.9663 2oap1 511 1.064 2pzeA 229 1.209 2qy9A 309 1.224 2pmkA 243 1.262 2ff7A 247 1.313 c.37.1.12 133377 2eyuA 261 1.319 1a7j 290 1.384 2cbzA 237 1.712 2bbsA 290 1.852 3b9qA 302 1.979 2ixeA 271 1.988 1sq5A 308 2.256 c.37.1.6 105882 1w5tA 412 2.391 a.4.5.11,c.37.1.20 114255,114256 2hf9A 226 2.671 2ze7A 253 2.832 1zu4A 320 2.994 1n2zA 245 3.077 c.92.2.2 79865 1z47A 355 3.196 2nq2C 253 3.215 2pcjA 224 3.222 2it1A 362 3.403 1vplA 256 3.540 c.37.1.12 113966 1oxxK 353 3.584 b.40.6.3,c.37.1.12 93715,93716 1sgwA 214 3.621 c.37.1.12 105541 2bjvA 265 3.729 1b0uA 262 3.819 c.37.1.12 32370 1lv7A 257 3.832 c.37.1.20 78232 1xewX 182 3.926 c.37.1.12 115235 1htwA 158 4.016 c.37.1.18 71083 1rj9A 304 4.197 a.24.13.1,c.37.1.10 97553,97554 1ji0A 240 4.373 c.37.1.12 71665 1g291 372 4.653 1d2nA 272 4.669 c.37.1.20 32428 1t9hA 307 4.790 b.40.4.5,c.37.1.8 112358,112359 2vhjA 331 5.261 1g6hA 257 5.491 c.37.1.12 60318 1w44A 331 5.571 c.37.1.11 114147 2a5yB 549 5.673 3bs4A 260 5.725 1sxjE 354 5.751 a.80.1.1,c.37.1.20 106089,106090 1njgA 250 5.840 c.37.1.20 85785 1tca 317 5.904 1tq4A 413 6.024 c.37.1.8 107201 2ihyA 279 6.166 1g8pA 350 6.403 c.37.1.20 60376 1n4aA 252 6.491 c.92.2.2 85317 2og2A 359 6.839 2r44A 331 6.935 1ye8A 178 7.838 c.37.1.11 123010 2d2eA 250 7.906 2gxaA 274 8.044 2bkhA 814 8.512 1u94A 356 8.675 c.37.1.11,d.48.1.1 107743,107744 1sxjA 511 8.990 a.80.1.1,c.37.1.20 106081,106082 1efdN 266 9.006 c.92.2.1 35597 2fnaA 357 9.083 a.4.5.11,c.37.1.20 133809,133810 1gl6A 436 9.337 c.37.1.11 70259 1sxjC 340 9.886 a.80.1.1,c.37.1.20 106085,106086 1dekA 241 10.19 c.37.1.1 31842 1tueA 212 10.30 c.37.1.20 107323 2q3hA 201 10.38 1e9rA 437 10.42 c.37.1.11 64827 1pujA 282 10.75 c.37.1.8 88294 2c9oA 456 10.98 2ga8A 359 11.02 1ls1A 295 11.82 a.24.13.1,c.37.1.10 78170,78171 2qgzA 308 12.20 2v26A 784 12.33 1w4rA 195 12.41 1odfA 290 12.61 c.37.1.6 92782 2pjzA 263 12.84 1w7jA 795 13.24 b.34.3.1,c.37.1.9 120688,120689 2r2aA 199 13.58 1w9iA 770 13.67 1vmaA 306 14.09 a.24.13.1,c.37.1.10 108887,108888 1knxA 312 14.32 c.98.2.1,c.91.1.2 77459,77460 1nijA 318 14.83 c.37.1.10,d.237.1.1 85741,85742 2hxsA 178 15.78 1nofA 383 17.72 b.71.1.2,c.1.8.3 92020,92021 2j69A 695 18.17 1vf8A 377 18.44 c.1.8.5,d.26.3.1 120029,120030 1ko7A 314 18.51 c.98.2.1,c.91.1.2 72797,72798 1yqtA 538 19.22 1fnnA 389 20.10 a.4.5.11,c.37.1.20 16129,32426 1ky3A 182 20.33 c.37.1.8 73193 3bwdD 182 21.02 3c5cA 187 21.03 1h65A 270 21.97 c.37.1.8 65640 2qi9C 249 21.97 2chuA 296 22.05 c.92.2.4 130485 1mh1A 186 22.30 c.37.1.8 32002 2akaB 299 22.59 c.37.1.8 126914 2rebA 352 24.28 c.37.1.11,d.48.1.1 32282,38767 2chgA 226 24.35 1uufA 369 25.25 b.35.1.2,c.2.1.1 100006,100007 1j8mF 297 25.76 a.24.13.1,c.37.1.10 62742,62743 2hjgA 436 26.22 2gcoA 201 26.28 2o2gA 223 26.79 1nlfA 279 27.86 c.37.1.11 85850 2fdxA 138 28.39 c.23.5.1 31192 1m7bA 184 28.83 c.37.1.8 74572 1xp8A 366 29.50 c.37.1.11,d.48.1.1 115735,115736 2b8tA 223 30.25 c.37.1.24,g.39.1.14 128109,128110 1ionA 243 30.30 c.37.1.10 62633 2o5vA 359 30.96 2zejA 184 31.55 2rexB 197 31.69 1a5tA 334 32.32 a.80.1.1,c.37.1.20 18450,32423 1f6bA 198 32.86 c.37.1.8 64986 2q8pA 260 32.86 2p5sA 199 33.02 2hcyA 347 33.72 1kidA 203 33.92 c.8.5.1 30771 1cp2A 269 34.06 c.37.1.10 32269 1cr1A 296 35.02 c.37.1.11 32286 2r7aA 256 36.43 3c4vA 426 37.51 2zadA 345 38.62 1xd8A 289 39.14 2iutA 574 39.32 1z08A 170 40.22 c.37.1.8 124303 2gjsA 176 41.39 c.37.1.8 135287 2bekA 257 41.39 1vcoA 550 42.33 c.23.16.1,c.37.1.10 108508,108509 2cf5A 357 42.40 1f2tA 149 42.94 c.37.1.12 32373 1lluA 342 43.06 b.35.1.2,c.2.1.1 91064,91065 2c8vA 288 43.35 c.37.1.10 130128 1ihuA 589 43.84 c.37.1.10,c.37.1.10 62394,62395 2am1A 454 44.01 1g3qA 237 44.95 c.37.1.10 60237 2afhE 289 45.02 c.37.1.10 126683 2j8mA 172 45.16 3b6uA 372 45.68 1e8cA 498 46.41 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2ebn 289 46.56 2cvhA 220 47.94 2ip2A 334 49.40 3bfkA 181 50.76 1a5t 334 51.03 2ozeA 298 52.09 2oblA 347 52.71 2qjwA 176 53.50 2yv5A 302 53.94 2hu5A 582 54.25 b.69.7.2,c.69.1.33 136763,136764 5nulA 138 54.65 c.23.5.1 31191 1jbkA 195 58.71 c.37.1.20 71631 1g41A 444 59.07 c.37.1.20 32450 1svmA 377 59.55 c.37.1.20 112126 3bosA 242 60.96 2a5dA 175 62.54 c.37.1.8 126172 1yqdA 366 62.90 1z06A 189 64.31 c.37.1.8 124301 2qmoA 220 64.33 1kid 203 64.93 2i1qA 322 65.18 a.60.4.1,c.37.1.11 136984,136985 1jmkC 230 65.24 c.69.1.22 71747 2g6bA 180 66.55 c.37.1.8 134701 2b7aA 293 67.74 1u3wA 374 67.91 b.35.1.2,c.2.1.1 113013,113014 1w78A 422 68.38 1g55A 343 68.50 c.66.1.26 34247 1n8kA 374 68.74 b.35.1.2,c.2.1.1 80298,80299 1n0wA 243 68.81 c.37.1.11 79772 1sznA 417 69.48 b.71.1.1,c.1.8.1 106162,106163 3b9pA 297 69.51 2jhfA 374 69.95 b.35.1.2,c.2.1.1 138314,138315 2q3fA 181 70.68 2r79A 283 71.09 2r6fA 972 71.69 2gk6A 624 72.09 2yvqA 143 72.19 1o5zA 442 72.34 c.59.1.2,c.72.2.2 92530,92531 1tf5A 844 72.36 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1f8fA 371 72.76 b.35.1.2,c.2.1.1 83246,83247 1bu8A 452 72.81 b.12.1.2,c.69.1.19 23647,34795 2bonA 332 73.13 2qxlA 658 73.15 1zj6A 187 74.17 c.37.1.8 125145 2uz0A 263 74.24 2dkhA 639 74.69 2p65A 187 76.90 1ox0A 430 77.78 c.95.1.1,c.95.1.1 87495,87496 1u0jA 267 78.17 c.37.1.20 107546 1pl8A 356 78.40 b.35.1.2,c.2.1.1 94878,94879 1jcfA 344 78.61 c.55.1.1,c.55.1.1 62878,62879 3cbwA 353 78.69 2dpyA 438 79.69 2cukA 311 80.50 2dpxA 174 81.17 1eg7A 557 83.36 c.37.1.10 32241 2jbwA 386 83.68 1srvA 145 84.30 c.8.5.1 30817 1m5wA 243 85.51 c.1.24.1 84836 1wcv1 257 85.56 1gg4A 452 86.32 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1ju2A 536 86.65 c.3.1.2,d.16.1.1 77169,77170 2b8wA 328 89.30 2hehA 387 89.64