# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gky 187 3.28e-07 2pbrA 195 4.27e-07 1kjwA 295 5.28e-07 b.34.2.1,c.37.1.1 68643,68644 2j41A 207 9.84e-07 2qorA 204 1.19e-06 1kgdA 180 1.25e-06 c.37.1.1 68582 1ex7A 186 1.33e-06 c.37.1.1 59537 1znwA 207 3.29e-06 c.37.1.1 125412 4tmkA 213 5.83e-06 c.37.1.1 31930 1p6xA 334 7.15e-06 c.37.1.1 94195 1p5zB 263 8.66e-06 c.37.1.1 87815 2ccjA 205 1.35e-05 2z0hA 197 1.70e-05 2vp4A 230 2.71e-05 1gtvA 214 3.18e-05 c.37.1.1 70537 1ki9A 192 5.32e-05 c.37.1.1 84404 1of1A 376 5.49e-05 c.37.1.1 103924 2c95A 196 6.11e-05 1qf9A 194 7.28e-05 c.37.1.1 31848 1e2kA 331 9.72e-05 c.37.1.1 31854 2an9A 207 0.000113 c.37.1.1 127037 1ukzA 203 0.000132 c.37.1.1 31840 1khtA 192 0.000140 c.37.1.1 84401 2bwjA 199 0.000147 1t0hB 224 0.000147 c.37.1.1 106208 2qt1A 207 0.000261 2cdnA 201 0.000289 c.37.1.1 130289 1s96A 219 0.000313 c.37.1.1 98740 1zm7A 230 0.000319 1ukz 203 0.000506 2axpA 173 0.000511 c.37.1.1 127497 2plrA 213 0.000648 1qhxA 178 0.000981 c.37.1.3 31936 2yvuA 186 0.001007 2pezA 179 0.001276 1knqA 175 0.002060 c.37.1.17 72786 2rhmA 193 0.002274 2bdtA 189 0.002298 c.37.1.25 128344 1y63A 184 0.003785 c.37.1.1 116494 2rgxA 206 0.003975 1akyA 220 0.004552 c.37.1.1,g.41.2.1 31896,45197 2f6rA 281 0.004937 1e4yA 214 0.004981 c.37.1.1,g.41.2.1 31901,45181 2ak3A 226 0.005753 c.37.1.1,g.41.2.1 31892,45193 1ak2A 233 0.006205 c.37.1.1,g.41.2.1 31894,45195 3be4A 217 0.006606 1e6cA 173 0.006883 c.37.1.2 59296 1zin 217 0.006953 3tmkA 216 0.007316 c.37.1.1 31920 2pt5A 168 0.007501 1ltqA 301 0.008204 c.108.1.9,c.37.1.1 78208,78209 1vhtA 218 0.009173 c.37.1.1 100700 1uj2A 252 0.01178 c.37.1.6 99452 1ly1A 181 0.01224 c.37.1.1 74334 2iyvA 184 0.01331 c.37.1.2 137812 1viaA 175 0.01428 c.37.1.2 100754 3c8uA 208 0.01499 1gvnB 287 0.01712 c.37.1.21 76354 1kdoA 227 0.01918 c.37.1.1 68478 1xrjA 261 0.01936 c.37.1.6 122256 1rkbA 173 0.01962 c.37.1.1 111854 1rz3A 201 0.02074 c.37.1.6 98132 2eu8A 216 0.02228 2ax4A 198 0.02234 1zd8A 227 0.02602 1zinA 217 0.02750 c.37.1.1,g.41.2.1 31915,45178 2g1kA 176 0.02966 c.37.1.2 134519 2qgnA 322 0.04224 1ckeA 227 0.04309 c.37.1.1 31846 1nn5A 215 0.04410 c.37.1.1 85892 1m7gA 211 0.04912 c.37.1.4 78724 1zuhA 168 0.05766 2p5tB 253 0.06037 3crrA 323 0.06047 2grjA 192 0.07731 1jjvA 206 0.1198 c.37.1.1 71698 1kagA 173 0.1384 c.37.1.2 72249 1a7jA 290 0.1508 c.37.1.6 31952 2gzaA 361 0.1993 1in4A 334 0.3549 a.4.5.11,c.37.1.20 62597,62598 2p67A 341 0.4276 1in6A 334 0.4320 a.4.5.11,c.37.1.20 62601,62602 1xx6A 191 0.4968 c.37.1.24,g.39.1.14 116139,116140 1xjcA 169 0.5343 c.37.1.10 115387 1l2tA 235 0.5609 c.37.1.12 73514 1sq5A 308 0.5885 c.37.1.6 105882 2f1rA 171 0.6272 2oap1 511 0.6719 1np6A 174 0.6725 c.37.1.10 85954 2qy9A 309 0.7357 1bif 469 0.7402 2pzeA 229 0.7460 1x6vA 630 0.7488 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1g6oA 330 0.8017 c.37.1.11 32430 2hf9A 226 0.8295 2ixeA 271 0.8896 1bifA 469 0.8954 c.37.1.7,c.60.1.4 31961,34003 2pmkA 243 0.9178 2pt7A 330 0.9459 1rj9A 304 0.9620 a.24.13.1,c.37.1.10 97553,97554 2eyuA 261 1.024 2bbsA 290 1.033 1tq4A 413 1.072 c.37.1.8 107201 2qm8A 337 1.105 2ff7A 247 1.116 c.37.1.12 133377 3b9qA 302 1.129 2cbzA 237 1.139 2ihyA 279 1.328 1lv7A 257 1.394 c.37.1.20 78232 2nq2C 253 1.426 1n2zA 245 1.449 c.92.2.2 79865 1a7j 290 1.505 1zu4A 320 1.592 1z47A 355 1.620 1oxxK 353 1.767 b.40.6.3,c.37.1.12 93715,93716 2it1A 362 1.822 2ze7A 253 1.925 1vplA 256 2.053 c.37.1.12 113966 1htwA 158 2.053 c.37.1.18 71083 1ji0A 240 2.063 c.37.1.12 71665 2pcjA 224 2.065 1sgwA 214 2.070 c.37.1.12 105541 1b0uA 262 2.087 c.37.1.12 32370 2orwA 184 2.184 2a5yB 549 2.320 2gxaA 274 2.361 1xewX 182 2.370 c.37.1.12 115235 2og2A 359 2.487 1n4aA 252 2.542 c.92.2.2 85317 1g291 372 2.560 2d2eA 250 2.711 1d2nA 272 2.876 c.37.1.20 32428 1gl6A 436 3.045 c.37.1.11 70259 1g6hA 257 3.089 c.37.1.12 60318 2j69A 695 3.471 1w44A 331 3.608 c.37.1.11 114147 1t9hA 307 3.889 b.40.4.5,c.37.1.8 112358,112359 1njgA 250 3.935 c.37.1.20 85785 1tca 317 3.943 1dekA 241 4.015 c.37.1.1 31842 2qgzA 308 4.115 2bjvA 265 4.129 1ye8A 178 4.367 c.37.1.11 123010 2fnaA 357 4.482 a.4.5.11,c.37.1.20 133809,133810 1tueA 212 4.548 c.37.1.20 107323 2vhjA 331 4.573 2c9oA 456 4.810 1a5tA 334 5.339 a.80.1.1,c.37.1.20 18450,32423 1ls1A 295 5.424 a.24.13.1,c.37.1.10 78170,78171 1sxjA 511 5.522 a.80.1.1,c.37.1.20 106081,106082 2o5vA 359 5.578 1pujA 282 5.682 c.37.1.8 88294 1ky3A 182 5.686 c.37.1.8 73193 1nijA 318 5.757 c.37.1.10,d.237.1.1 85741,85742 1odfA 290 6.090 c.37.1.6 92782 2r2aA 199 6.270 1w4rA 195 6.335 1w5tA 412 6.408 a.4.5.11,c.37.1.20 114255,114256 2dkhA 639 6.915 2ga8A 359 6.981 1e9rA 437 7.050 c.37.1.11 64827 2qi9C 249 7.159 3c5cA 187 7.802 1vmaA 306 7.935 a.24.13.1,c.37.1.10 108887,108888 1sxjE 354 8.262 a.80.1.1,c.37.1.20 106089,106090 1u94A 356 8.489 c.37.1.11,d.48.1.1 107743,107744 2q8pA 260 8.703 1svmA 377 8.809 c.37.1.20 112126 1g8pA 350 9.372 c.37.1.20 60376 2v26A 784 9.472 1f6bA 198 9.708 c.37.1.8 64986 2r44A 331 9.725 1sxjC 340 9.794 a.80.1.1,c.37.1.20 106085,106086 1efdN 266 10.21 c.92.2.1 35597 1knxA 312 10.31 c.98.2.1,c.91.1.2 77459,77460 1u0jA 267 10.36 c.37.1.20 107546 2pjzA 263 10.79 2hxsA 178 11.05 2bkhA 814 11.38 1w7jA 795 12.26 b.34.3.1,c.37.1.9 120688,120689 1h65A 270 12.34 c.37.1.8 65640 2q3hA 201 12.50 2b8tA 223 12.55 c.37.1.24,g.39.1.14 128109,128110 2akaB 299 12.72 c.37.1.8 126914 1a5t 334 12.83 1ko7A 314 13.01 c.98.2.1,c.91.1.2 72797,72798 1zj6A 187 13.79 c.37.1.8 125145 1z08A 170 13.95 c.37.1.8 124303 1fnnA 389 15.53 a.4.5.11,c.37.1.20 16129,32426 3bwdD 182 16.34 2chuA 296 16.37 c.92.2.4 130485 1j8mF 297 16.86 a.24.13.1,c.37.1.10 62742,62743 1w9iA 770 18.09 2b7aA 293 19.84 1yqtA 538 20.29 3bs4A 260 20.32 1mh1A 186 21.10 c.37.1.8 32002 2g6bA 180 21.20 c.37.1.8 134701 1xp8A 366 22.04 c.37.1.11,d.48.1.1 115735,115736 2aebA 322 22.66 c.42.1.1 126617 2zadA 345 22.79 1vf8A 377 22.84 c.1.8.5,d.26.3.1 120029,120030 2cvhA 220 23.13 2rebA 352 23.21 c.37.1.11,d.48.1.1 32282,38767 1ionA 243 24.05 c.37.1.10 62633 1nlfA 279 24.65 c.37.1.11 85850 2hjgA 436 25.09 2rexB 197 25.34 2bm8A 236 27.70 c.66.1.50 128771 2zejA 184 27.70 1kidA 203 28.13 c.8.5.1 30771 1g3qA 237 28.97 c.37.1.10 60237 2bekA 257 29.85 2hu5A 582 29.87 b.69.7.2,c.69.1.33 136763,136764 3bfkA 181 29.90 2chgA 226 30.63 2o2gA 223 31.22 2iutA 574 32.89 2h17A 181 33.98 3c4vA 426 34.16 1cp2A 269 34.64 c.37.1.10 32269 2ozeA 298 35.12 1ihuA 589 35.15 c.37.1.10,c.37.1.10 62394,62395 2bonA 332 35.32 1m7bA 184 35.56 c.37.1.8 74572 2gcoA 201 35.71 1jmkC 230 36.00 c.69.1.22 71747 1ufoA 238 36.69 c.69.1.27 99344 1xd8A 289 37.11 1g41A 444 37.50 c.37.1.20 32450 1wcv1 257 38.20 2am1A 454 38.72 1cr1A 296 39.10 c.37.1.11 32286 1n0wA 243 39.51 c.37.1.11 79772 1jbkA 195 39.94 c.37.1.20 71631 3b9pA 297 41.86 2yv5A 302 42.01 1bu8A 452 42.47 b.12.1.2,c.69.1.19 23647,34795 2r6fA 972 43.06 2r79A 283 43.35 1xtpA 254 43.74 c.66.1.42 116031 2etvA 346 43.86 c.92.2.4 132372 2a5dA 175 43.92 c.37.1.8 126172 1nofA 383 44.01 b.71.1.2,c.1.8.3 92020,92021 1kngA 156 44.16 c.47.1.10 72777 2r7aA 256 44.29 1tuoA 464 44.37 2qjwA 176 47.18 1r8sA 164 47.30 c.37.1.8 97247 2gjsA 176 48.88 c.37.1.8 135287 1iz0A 302 49.26 b.35.1.2,c.2.1.1 83821,83822 2cf5A 357 50.05 2qmoA 220 52.02 2fdxA 138 52.12 c.23.5.1 31192 2hcyA 347 52.58 1x3sA 195 52.82 c.37.1.8 121670 2b8wA 328 54.11 2p5sA 199 54.56 1azsC 388 54.81 a.66.1.1,c.37.1.8 18203,32086 2c8vA 288 55.88 c.37.1.10 130128 2i1qA 322 56.94 a.60.4.1,c.37.1.11 136984,136985 1uufA 369 57.54 b.35.1.2,c.2.1.1 100006,100007 2gk6A 624 58.19 1e8cA 498 59.63 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2dpxA 174 60.05 1tcaA 317 60.77 c.69.1.17 34726 1hplA 449 62.06 b.12.1.2,c.69.1.19 23639,34787 2j8mA 172 62.78 2p6pA 384 63.09 1m1zA 513 63.52 c.26.2.1,d.153.1.1 78457,78458 1kid 203 63.61 3bosA 242 64.81 2qu8A 228 65.23 1f2tA 149 66.80 c.37.1.12 32373 1g55A 343 67.16 c.66.1.26 34247 1lluA 342 67.55 b.35.1.2,c.2.1.1 91064,91065 2afhE 289 68.24 c.37.1.10 126683 1o5zA 442 68.27 c.59.1.2,c.72.2.2 92530,92531 1zd9A 188 69.94 c.37.1.8 124938 2oblA 347 70.16 1b6g 310 70.17 2p74A 263 70.75 1f8fA 371 71.04 b.35.1.2,c.2.1.1 83246,83247 1r2qA 170 72.97 c.37.1.8 96874 2z43A 324 73.41 1vj0A 380 74.55 b.35.1.2,c.2.1.1 100786,100787 2fz4A 237 74.88 c.37.1.19 134419 1wmsA 177 75.77 c.37.1.8 109414 2cukA 311 77.55 1oi7A 288 77.76 c.2.1.8,c.23.4.1 87049,87050 2dpyA 438 79.71 1l7aA 318 80.80 c.69.1.25 77772 2jbwA 386 81.06 2ffqA 171 81.21 1vkcA 158 81.79 d.108.1.1 113663 1z4eA 153 85.66 d.108.1.1 124431 1z06A 189 85.68 c.37.1.8 124301 1w78A 422 87.91 2p65A 187 89.36