# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gky 187 1.45e-07 2pbrA 195 1.78e-07 1kjwA 295 2.62e-07 b.34.2.1,c.37.1.1 68643,68644 2j41A 207 4.27e-07 2qorA 204 5.10e-07 1kgdA 180 5.79e-07 c.37.1.1 68582 1ex7A 186 5.89e-07 c.37.1.1 59537 1znwA 207 1.39e-06 c.37.1.1 125412 4tmkA 213 2.42e-06 c.37.1.1 31930 1p6xA 334 3.20e-06 c.37.1.1 94195 1p5zB 263 4.67e-06 c.37.1.1 87815 2ccjA 205 7.42e-06 2z0hA 197 8.55e-06 2vp4A 230 1.25e-05 1gtvA 214 1.56e-05 c.37.1.1 70537 1of1A 376 2.31e-05 c.37.1.1 103924 1ki9A 192 2.81e-05 c.37.1.1 84404 2c95A 196 4.10e-05 1qf9A 194 4.43e-05 c.37.1.1 31848 1e2kA 331 5.09e-05 c.37.1.1 31854 2an9A 207 5.99e-05 c.37.1.1 127037 1t0hB 224 8.03e-05 c.37.1.1 106208 1khtA 192 8.06e-05 c.37.1.1 84401 1ukzA 203 8.19e-05 c.37.1.1 31840 2bwjA 199 8.50e-05 1zm7A 230 0.000135 2qt1A 207 0.000156 2cdnA 201 0.000170 c.37.1.1 130289 1s96A 219 0.000186 c.37.1.1 98740 2axpA 173 0.000291 c.37.1.1 127497 1ukz 203 0.000309 2plrA 213 0.000414 1qhxA 178 0.000599 c.37.1.3 31936 2yvuA 186 0.000643 2pezA 179 0.000957 2rhmA 193 0.001478 1knqA 175 0.001807 c.37.1.17 72786 2bdtA 189 0.002005 c.37.1.25 128344 1y63A 184 0.002303 c.37.1.1 116494 2rgxA 206 0.002388 2f6rA 281 0.002621 1akyA 220 0.002657 c.37.1.1,g.41.2.1 31896,45197 1e4yA 214 0.003023 c.37.1.1,g.41.2.1 31901,45181 2ak3A 226 0.003538 c.37.1.1,g.41.2.1 31892,45193 3be4A 217 0.003582 1ak2A 233 0.004332 c.37.1.1,g.41.2.1 31894,45195 1zin 217 0.004608 1e6cA 173 0.004737 c.37.1.2 59296 2pt5A 168 0.004870 1ltqA 301 0.005456 c.108.1.9,c.37.1.1 78208,78209 3tmkA 216 0.005668 c.37.1.1 31920 1vhtA 218 0.006089 c.37.1.1 100700 1ly1A 181 0.007696 c.37.1.1 74334 1gvnB 287 0.008082 c.37.1.21 76354 2iyvA 184 0.009311 c.37.1.2 137812 1uj2A 252 0.009922 c.37.1.6 99452 1viaA 175 0.01050 c.37.1.2 100754 3c8uA 208 0.01202 1rz3A 201 0.01212 c.37.1.6 98132 2eu8A 216 0.01254 1kdoA 227 0.01316 c.37.1.1 68478 1xrjA 261 0.01437 c.37.1.6 122256 1rkbA 173 0.01538 c.37.1.1 111854 1zd8A 227 0.01759 1zinA 217 0.01788 c.37.1.1,g.41.2.1 31915,45178 2ax4A 198 0.01838 2g1kA 176 0.02577 c.37.1.2 134519 2qgnA 322 0.02819 1ckeA 227 0.02903 c.37.1.1 31846 3crrA 323 0.03220 1nn5A 215 0.03382 c.37.1.1 85892 1m7gA 211 0.03703 c.37.1.4 78724 2p5tB 253 0.04101 1zuhA 168 0.04379 2grjA 192 0.04620 1jjvA 206 0.08702 c.37.1.1 71698 1kagA 173 0.1108 c.37.1.2 72249 1a7jA 290 0.1200 c.37.1.6 31952 2gzaA 361 0.1701 1in4A 334 0.2656 a.4.5.11,c.37.1.20 62597,62598 1in6A 334 0.3086 a.4.5.11,c.37.1.20 62601,62602 1xjcA 169 0.3775 c.37.1.10 115387 1xx6A 191 0.3903 c.37.1.24,g.39.1.14 116139,116140 1np6A 174 0.4605 c.37.1.10 85954 2f1rA 171 0.4822 1bif 469 0.4894 1sq5A 308 0.4922 c.37.1.6 105882 2p67A 341 0.5274 2qy9A 309 0.5352 1bifA 469 0.5743 c.37.1.7,c.60.1.4 31961,34003 1l2tA 235 0.5818 c.37.1.12 73514 2hf9A 226 0.6058 1x6vA 630 0.6157 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2oap1 511 0.6266 2pzeA 229 0.6268 2ixeA 271 0.6968 1tq4A 413 0.7254 c.37.1.8 107201 1rj9A 304 0.7350 a.24.13.1,c.37.1.10 97553,97554 1g6oA 330 0.7564 c.37.1.11 32430 2bbsA 290 0.8185 2pmkA 243 0.8410 2pt7A 330 0.8625 2nq2C 253 0.8774 2ff7A 247 0.8955 c.37.1.12 133377 2eyuA 261 0.9050 3b9qA 302 0.9163 2qm8A 337 1.007 2cbzA 237 1.035 2ihyA 279 1.052 1z47A 355 1.102 1zu4A 320 1.118 1lv7A 257 1.186 c.37.1.20 78232 1a7j 290 1.208 1oxxK 353 1.236 b.40.6.3,c.37.1.12 93715,93716 1n2zA 245 1.257 c.92.2.2 79865 2it1A 362 1.443 1sgwA 214 1.515 c.37.1.12 105541 1htwA 158 1.591 c.37.1.18 71083 2a5yB 549 1.605 2orwA 184 1.615 1ji0A 240 1.741 c.37.1.12 71665 2pcjA 224 1.777 1b0uA 262 1.782 c.37.1.12 32370 1vplA 256 1.956 c.37.1.12 113966 2d2eA 250 1.962 2ze7A 253 1.969 1xewX 182 1.980 c.37.1.12 115235 1n4aA 252 2.000 c.92.2.2 85317 1g291 372 2.029 1d2nA 272 2.033 c.37.1.20 32428 2gxaA 274 2.037 2og2A 359 2.225 1gl6A 436 2.496 c.37.1.11 70259 1w44A 331 2.734 c.37.1.11 114147 1g6hA 257 2.747 c.37.1.12 60318 1t9hA 307 2.846 b.40.4.5,c.37.1.8 112358,112359 2qgzA 308 3.036 2bjvA 265 3.075 1dekA 241 3.362 c.37.1.1 31842 2vhjA 331 3.370 1pujA 282 3.390 c.37.1.8 88294 1njgA 250 3.401 c.37.1.20 85785 1tca 317 3.677 2j69A 695 3.845 1tueA 212 3.876 c.37.1.20 107323 2fnaA 357 4.031 a.4.5.11,c.37.1.20 133809,133810 1sxjA 511 4.214 a.80.1.1,c.37.1.20 106081,106082 1ls1A 295 4.341 a.24.13.1,c.37.1.10 78170,78171 1ye8A 178 4.525 c.37.1.11 123010 2c9oA 456 4.611 1nijA 318 4.655 c.37.1.10,d.237.1.1 85741,85742 1vmaA 306 5.164 a.24.13.1,c.37.1.10 108887,108888 1a5tA 334 5.197 a.80.1.1,c.37.1.20 18450,32423 2o5vA 359 5.484 2ga8A 359 5.739 1w5tA 412 5.858 a.4.5.11,c.37.1.20 114255,114256 1odfA 290 5.964 c.37.1.6 92782 1f6bA 198 6.194 c.37.1.8 64986 2qi9C 249 6.359 1e9rA 437 6.360 c.37.1.11 64827 1w4rA 195 6.423 2v26A 784 7.036 1ky3A 182 7.081 c.37.1.8 73193 2r2aA 199 7.127 1knxA 312 7.429 c.98.2.1,c.91.1.2 77459,77460 2dkhA 639 7.517 3c5cA 187 7.538 1sxjE 354 7.584 a.80.1.1,c.37.1.20 106089,106090 1svmA 377 7.719 c.37.1.20 112126 1g8pA 350 7.731 c.37.1.20 60376 2q8pA 260 7.971 2bkhA 814 8.304 1h65A 270 8.469 c.37.1.8 65640 2pjzA 263 8.534 1u94A 356 8.620 c.37.1.11,d.48.1.1 107743,107744 2r44A 331 8.648 1u0jA 267 8.700 c.37.1.20 107546 1w7jA 795 9.434 b.34.3.1,c.37.1.9 120688,120689 1efdN 266 9.773 c.92.2.1 35597 1ko7A 314 10.16 c.98.2.1,c.91.1.2 72797,72798 2akaB 299 10.39 c.37.1.8 126914 2hxsA 178 10.85 1sxjC 340 11.56 a.80.1.1,c.37.1.20 106085,106086 2q3hA 201 11.86 2chuA 296 11.87 c.92.2.4 130485 1w9iA 770 13.16 2b8tA 223 13.36 c.37.1.24,g.39.1.14 128109,128110 1a5t 334 13.66 3bwdD 182 13.93 1fnnA 389 14.59 a.4.5.11,c.37.1.20 16129,32426 1vf8A 377 14.94 c.1.8.5,d.26.3.1 120029,120030 1j8mF 297 15.54 a.24.13.1,c.37.1.10 62742,62743 1zj6A 187 16.41 c.37.1.8 125145 1z08A 170 17.53 c.37.1.8 124303 1xp8A 366 17.69 c.37.1.11,d.48.1.1 115735,115736 1mh1A 186 18.36 c.37.1.8 32002 1yqtA 538 19.03 2hjgA 436 19.18 2rebA 352 19.25 c.37.1.11,d.48.1.1 32282,38767 3bs4A 260 19.59 2cvhA 220 19.83 2bonA 332 21.29 2rexB 197 22.26 2b7aA 293 22.64 1xtpA 254 23.91 c.66.1.42 116031 2g6bA 180 24.05 c.37.1.8 134701 1ionA 243 24.07 c.37.1.10 62633 2aebA 322 24.13 c.42.1.1 126617 2zejA 184 24.48 2o2gA 223 24.71 1nlfA 279 24.84 c.37.1.11 85850 1jmkC 230 25.19 c.69.1.22 71747 2zadA 345 26.21 3bfkA 181 26.61 2hu5A 582 26.74 b.69.7.2,c.69.1.33 136763,136764 2chgA 226 27.36 1m7bA 184 27.40 c.37.1.8 74572 2bekA 257 27.62 3c4vA 426 27.78 1g3qA 237 28.37 c.37.1.10 60237 2ozeA 298 31.13 1nofA 383 31.19 b.71.1.2,c.1.8.3 92020,92021 1jbkA 195 31.95 c.37.1.20 71631 2bm8A 236 32.19 c.66.1.50 128771 2etvA 346 32.70 c.92.2.4 132372 2gcoA 201 32.78 1ufoA 238 33.65 c.69.1.27 99344 2am1A 454 34.30 1kidA 203 34.71 c.8.5.1 30771 2p5sA 199 35.39 2r7aA 256 35.57 2r6fA 972 35.60 2yv5A 302 35.77 2fdxA 138 36.67 c.23.5.1 31192 2h17A 181 37.60 1ihuA 589 37.76 c.37.1.10,c.37.1.10 62394,62395 2iutA 574 37.77 2r79A 283 37.87 1wcv1 257 38.96 1g41A 444 39.12 c.37.1.20 32450 1cp2A 269 39.68 c.37.1.10 32269 2qjwA 176 39.79 1cr1A 296 39.96 c.37.1.11 32286 1bu8A 452 39.96 b.12.1.2,c.69.1.19 23647,34795 1n0wA 243 41.89 c.37.1.11 79772 1xd8A 289 42.51 2gjsA 176 43.86 c.37.1.8 135287 3b9pA 297 44.28 1kngA 156 45.35 c.47.1.10 72777 2cf5A 357 46.04 2dpxA 174 46.67 2a5dA 175 47.00 c.37.1.8 126172 1tuoA 464 48.12 2dpyA 438 48.95 2hcyA 347 49.41 1r8sA 164 50.95 c.37.1.8 97247 1iz0A 302 51.32 b.35.1.2,c.2.1.1 83821,83822 1azsC 388 51.48 a.66.1.1,c.37.1.8 18203,32086 2oblA 347 51.65 3bosA 242 51.89 2qmoA 220 52.21 2b8wA 328 52.80 1f2tA 149 53.04 c.37.1.12 32373 1e8cA 498 54.06 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1m1zA 513 54.57 c.26.2.1,d.153.1.1 78457,78458 2j8mA 172 55.14 1uufA 369 55.42 b.35.1.2,c.2.1.1 100006,100007 2gk6A 624 55.50 1tcaA 317 56.14 c.69.1.17 34726 1vkcA 158 57.36 d.108.1.1 113663 1o5zA 442 57.92 c.59.1.2,c.72.2.2 92530,92531 2p74A 263 58.22 2p6pA 384 58.58 2c8vA 288 58.89 c.37.1.10 130128 1f8fA 371 59.51 b.35.1.2,c.2.1.1 83246,83247 1hplA 449 60.59 b.12.1.2,c.69.1.19 23639,34787 2i1qA 322 61.41 a.60.4.1,c.37.1.11 136984,136985 1b6g 310 63.66 1vj0A 380 65.28 b.35.1.2,c.2.1.1 100786,100787 1x3sA 195 65.70 c.37.1.8 121670 1lluA 342 65.79 b.35.1.2,c.2.1.1 91064,91065 2fz4A 237 65.88 c.37.1.19 134419 1w78A 422 70.17 2pi6A 361 70.29 2afhE 289 70.44 c.37.1.10 126683 2z43A 324 73.96 1g55A 343 74.04 c.66.1.26 34247 1oi7A 288 77.67 c.2.1.8,c.23.4.1 87049,87050 2p65A 187 78.04 1pswA 348 79.54 c.87.1.7 88287 1zd9A 188 79.65 c.37.1.8 124938 1l7aA 318 79.84 c.69.1.25 77772 1l1eA 287 80.01 c.66.1.18 73454 1z06A 189 80.08 c.37.1.8 124301 1kid 203 81.22 2ffqA 171 81.71 1jcfA 344 81.73 c.55.1.1,c.55.1.1 62878,62879 1zczA 464 87.19 c.24.1.3,c.97.1.4 124923,124924 7a3hA 303 87.62 c.1.8.3 28817 1qzzA 374 88.39 a.4.5.29,c.66.1.12 96719,96720 2jbwA 386 89.37 1z4eA 153 89.38 d.108.1.1 124431 3co5A 143 89.55