# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbrA 195 2.04e-05 1gky 187 2.67e-05 1kjwA 295 3.60e-05 b.34.2.1,c.37.1.1 68643,68644 2qorA 204 4.10e-05 2j41A 207 4.25e-05 1ex7A 186 5.26e-05 c.37.1.1 59537 1znwA 207 7.74e-05 c.37.1.1 125412 1kgdA 180 0.000190 c.37.1.1 68582 2ccjA 205 0.000315 1p6xA 334 0.000466 c.37.1.1 94195 1gtvA 214 0.000504 c.37.1.1 70537 4tmkA 213 0.000534 c.37.1.1 31930 1p5zB 263 0.000748 c.37.1.1 87815 2c95A 196 0.000843 2z0hA 197 0.000883 1ukzA 203 0.001036 c.37.1.1 31840 2bwjA 199 0.001181 1qf9A 194 0.001188 c.37.1.1 31848 2an9A 207 0.001594 c.37.1.1 127037 1ki9A 192 0.002187 c.37.1.1 84404 2axpA 173 0.002958 c.37.1.1 127497 1of1A 376 0.003185 c.37.1.1 103924 1s96A 219 0.003209 c.37.1.1 98740 2vp4A 230 0.003734 1t0hB 224 0.004152 c.37.1.1 106208 1ukz 203 0.004353 1qhxA 178 0.005834 c.37.1.3 31936 1khtA 192 0.008344 c.37.1.1 84401 2cdnA 201 0.009291 c.37.1.1 130289 2plrA 213 0.01010 2qt1A 207 0.01138 2rhmA 193 0.01152 2yvuA 186 0.01198 1knqA 175 0.01915 c.37.1.17 72786 2bdtA 189 0.02075 c.37.1.25 128344 1e2kA 331 0.02085 c.37.1.1 31854 2pt5A 168 0.02201 2iyvA 184 0.02203 c.37.1.2 137812 2pezA 179 0.02996 1e6cA 173 0.03153 c.37.1.2 59296 1zm7A 230 0.03321 1e4yA 214 0.03351 c.37.1.1,g.41.2.1 31901,45181 1ak2A 233 0.03380 c.37.1.1,g.41.2.1 31894,45195 1akyA 220 0.04196 c.37.1.1,g.41.2.1 31896,45197 2rgxA 206 0.04732 3c8uA 208 0.05072 1y63A 184 0.05569 c.37.1.1 116494 2f6rA 281 0.05612 3be4A 217 0.06034 1viaA 175 0.06277 c.37.1.2 100754 2ak3A 226 0.06636 c.37.1.1,g.41.2.1 31892,45193 1gvnB 287 0.06740 c.37.1.21 76354 1vhtA 218 0.07111 c.37.1.1 100700 2g1kA 176 0.07298 c.37.1.2 134519 1zin 217 0.08022 1rz3A 201 0.1004 c.37.1.6 98132 1kdoA 227 0.1057 c.37.1.1 68478 2eu8A 216 0.1216 1xrjA 261 0.1223 c.37.1.6 122256 1uj2A 252 0.1266 c.37.1.6 99452 1zd8A 227 0.1389 1zinA 217 0.1484 c.37.1.1,g.41.2.1 31915,45178 1m7gA 211 0.1795 c.37.1.4 78724 1rkbA 173 0.1912 c.37.1.1 111854 3crrA 323 0.1913 3tmkA 216 0.2007 c.37.1.1 31920 2ax4A 198 0.2073 1ly1A 181 0.2562 c.37.1.1 74334 1zuhA 168 0.2659 1nn5A 215 0.2984 c.37.1.1 85892 2p5tB 253 0.3237 1ckeA 227 0.4064 c.37.1.1 31846 2grjA 192 0.6103 1kagA 173 0.6294 c.37.1.2 72249 1jjvA 206 0.8353 c.37.1.1 71698 2qgnA 322 0.9468 1ltqA 301 1.244 c.108.1.9,c.37.1.1 78208,78209 1np6A 174 1.781 c.37.1.10 85954 1sq5A 308 2.258 c.37.1.6 105882 1in6A 334 2.436 a.4.5.11,c.37.1.20 62601,62602 1a7jA 290 2.484 c.37.1.6 31952 2p67A 341 2.795 2bbsA 290 3.004 1xx6A 191 3.364 c.37.1.24,g.39.1.14 116139,116140 2pzeA 229 3.377 1bif 469 3.632 1in4A 334 3.713 a.4.5.11,c.37.1.20 62597,62598 2pt7A 330 3.895 2gzaA 361 3.923 2qy9A 309 4.169 1lv7A 257 4.236 c.37.1.20 78232 2f1rA 171 4.326 1t9hA 307 4.500 b.40.4.5,c.37.1.8 112358,112359 2eyuA 261 4.805 2cbzA 237 5.160 3b9qA 302 5.206 1bifA 469 5.270 c.37.1.7,c.60.1.4 31961,34003 2ff7A 247 5.322 c.37.1.12 133377 2qm8A 337 5.699 1l2tA 235 5.805 c.37.1.12 73514 2orwA 184 5.892 2ixeA 271 5.902 2pmkA 243 6.382 1zu4A 320 6.468 1a7j 290 6.575 1g6oA 330 6.781 c.37.1.11 32430 1w44A 331 6.989 c.37.1.11 114147 1xjcA 169 7.015 c.37.1.10 115387 2ihyA 279 7.266 1rj9A 304 7.431 a.24.13.1,c.37.1.10 97553,97554 1ji0A 240 7.863 c.37.1.12 71665 1oxxK 353 8.121 b.40.6.3,c.37.1.12 93715,93716 2og2A 359 8.193 2it1A 362 8.352 1z47A 355 8.478 1odfA 290 8.524 c.37.1.6 92782 2oap1 511 8.657 1tq4A 413 8.887 c.37.1.8 107201 1b0uA 262 9.339 c.37.1.12 32370 2pcjA 224 9.355 1vplA 256 9.802 c.37.1.12 113966 2nq2C 253 10.64 2a5yB 549 11.38 1g6hA 257 11.84 c.37.1.12 60318 1x6vA 630 11.99 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2ze7A 253 12.56 2bjvA 265 12.81 1sgwA 214 14.58 c.37.1.12 105541 1n2zA 245 14.76 c.92.2.2 79865 1g291 372 14.92 2vhjA 331 15.73 2d2eA 250 16.00 2gxaA 274 17.68 1tca 317 17.79 2bkhA 814 18.41 2fnaA 357 18.61 a.4.5.11,c.37.1.20 133809,133810 1dekA 241 18.92 c.37.1.1 31842 1ye8A 178 19.37 c.37.1.11 123010 2v26A 784 19.52 2qxlA 658 20.16 2pjzA 263 20.44 1d2nA 272 20.57 c.37.1.20 32428 1htwA 158 22.26 c.37.1.18 71083 1efdN 266 22.39 c.92.2.1 35597 1njgA 250 22.82 c.37.1.20 85785 1ls1A 295 22.91 a.24.13.1,c.37.1.10 78170,78171 1jmkC 230 23.07 c.69.1.22 71747 2qi9C 249 23.51 1a5tA 334 23.63 a.80.1.1,c.37.1.20 18450,32423 2akaB 299 23.64 c.37.1.8 126914 2qgzA 308 24.25 1knxA 312 24.82 c.98.2.1,c.91.1.2 77459,77460 1n4aA 252 25.26 c.92.2.2 85317 2o2gA 223 26.34 1vmaA 306 26.46 a.24.13.1,c.37.1.10 108887,108888 1sxjA 511 27.67 a.80.1.1,c.37.1.20 106081,106082 1w9iA 770 28.09 1g8pA 350 29.58 c.37.1.20 60376 1gl6A 436 30.33 c.37.1.11 70259 1sxjE 354 30.74 a.80.1.1,c.37.1.20 106089,106090 2hxsA 178 33.09 1yqtA 538 33.73 1im8A 244 34.82 c.66.1.14 66212 1nijA 318 35.02 c.37.1.10,d.237.1.1 85741,85742 2c9oA 456 35.49 1ihuA 589 35.57 c.37.1.10,c.37.1.10 62394,62395 2qjwA 176 35.66 1w7jA 795 36.15 b.34.3.1,c.37.1.9 120688,120689 1ko7A 314 36.73 c.98.2.1,c.91.1.2 72797,72798 2ga8A 359 37.30 3c5cA 187 38.43 1e9rA 437 41.41 c.37.1.11 64827 1w5tA 412 41.42 a.4.5.11,c.37.1.20 114255,114256 1fnnA 389 43.86 a.4.5.11,c.37.1.20 16129,32426 1h65A 270 46.43 c.37.1.8 65640 1j09A 468 47.04 a.97.1.1,c.26.1.1 77025,77026 1gdeA 389 47.56 c.67.1.1 60456 2hjgA 436 47.61 1ky3A 182 47.67 c.37.1.8 73193 2hf9A 226 47.75 1sxjC 340 48.03 a.80.1.1,c.37.1.20 106085,106086 1tueA 212 49.09 c.37.1.20 107323 1nlfA 279 49.37 c.37.1.11 85850 1f6bA 198 51.30 c.37.1.8 64986 2dkhA 639 51.37 1u94A 356 52.02 c.37.1.11,d.48.1.1 107743,107744 2q3hA 201 52.20 1zj6A 187 53.61 c.37.1.8 125145 1svmA 377 56.43 c.37.1.20 112126 1ynuA 473 56.54 c.67.1.4 123762 1pujA 282 56.89 c.37.1.8 88294 1xewX 182 58.87 c.37.1.12 115235 1a5t 334 60.31 1b6gA 310 60.49 c.69.1.8 34661 2q8pA 260 60.90 1g55A 343 61.00 c.66.1.26 34247 1cr1A 296 61.64 c.37.1.11 32286 2yv5A 302 61.67 1m1zA 513 67.77 c.26.2.1,d.153.1.1 78457,78458 3bosA 242 68.00 1kyzA 365 70.23 a.4.5.29,c.66.1.12 73312,73313 1kngA 156 72.29 c.47.1.10 72777 1w4rA 195 73.14 2ip2A 334 73.54 1lw7A 365 73.56 c.26.1.3,c.37.1.1 74295,74296 1jcfA 344 75.13 c.55.1.1,c.55.1.1 62878,62879 2j8mA 172 76.57 1kidA 203 76.75 c.8.5.1 30771 2b8tA 223 79.76 c.37.1.24,g.39.1.14 128109,128110 1bupA 386 80.49 c.55.1.1,c.55.1.1 33377,33378 2rexB 197 81.03 1j8mF 297 81.36 a.24.13.1,c.37.1.10 62742,62743 1b6g 310 81.94 2p12A 176 81.95 1sznA 417 82.03 b.71.1.1,c.1.8.1 106162,106163 1ionA 243 82.84 c.37.1.10 62633 1z06A 189 83.38 c.37.1.8 124301 1hplA 449 83.67 b.12.1.2,c.69.1.19 23639,34787 2p5sA 199 84.89 2r7aA 256 86.57 2r6fA 972 88.61