# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1kjwA 295 3.61e-07 b.34.2.1,c.37.1.1 68643,68644 2pbrA 195 4.39e-07 1gky 187 5.02e-07 2j41A 207 1.22e-06 1ex7A 186 1.67e-06 c.37.1.1 59537 1kgdA 180 1.72e-06 c.37.1.1 68582 2qorA 204 1.89e-06 1znwA 207 3.61e-06 c.37.1.1 125412 1p6xA 334 7.20e-06 c.37.1.1 94195 1p5zB 263 8.21e-06 c.37.1.1 87815 2ccjA 205 1.18e-05 2z0hA 197 1.22e-05 4tmkA 213 1.65e-05 c.37.1.1 31930 1gtvA 214 2.61e-05 c.37.1.1 70537 1ki9A 192 4.87e-05 c.37.1.1 84404 1of1A 376 5.74e-05 c.37.1.1 103924 2vp4A 230 8.17e-05 1khtA 192 0.000105 c.37.1.1 84401 2c95A 196 0.000109 1e2kA 331 0.000114 c.37.1.1 31854 1t0hB 224 0.000157 c.37.1.1 106208 2an9A 207 0.000180 c.37.1.1 127037 2qt1A 207 0.000251 2bwjA 199 0.000309 1ukzA 203 0.000337 c.37.1.1 31840 1zm7A 230 0.000382 1qf9A 194 0.000406 c.37.1.1 31848 1s96A 219 0.000516 c.37.1.1 98740 2cdnA 201 0.000687 c.37.1.1 130289 2axpA 173 0.000972 c.37.1.1 127497 2plrA 213 0.001083 1ukz 203 0.001223 1qhxA 178 0.001236 c.37.1.3 31936 2rhmA 193 0.001433 2bdtA 189 0.001518 c.37.1.25 128344 2yvuA 186 0.001706 1knqA 175 0.001823 c.37.1.17 72786 2pezA 179 0.002302 2rgxA 206 0.003369 1akyA 220 0.003634 c.37.1.1,g.41.2.1 31896,45197 3be4A 217 0.004549 1e4yA 214 0.005219 c.37.1.1,g.41.2.1 31901,45181 1zin 217 0.006310 1vhtA 218 0.006499 c.37.1.1 100700 3tmkA 216 0.006911 c.37.1.1 31920 1y63A 184 0.007855 c.37.1.1 116494 1ak2A 233 0.008170 c.37.1.1,g.41.2.1 31894,45195 2ak3A 226 0.009260 c.37.1.1,g.41.2.1 31892,45193 1e6cA 173 0.009272 c.37.1.2 59296 2pt5A 168 0.009500 1ltqA 301 0.01127 c.108.1.9,c.37.1.1 78208,78209 2iyvA 184 0.01347 c.37.1.2 137812 3c8uA 208 0.01380 2f6rA 281 0.01412 1ly1A 181 0.01700 c.37.1.1 74334 1gvnB 287 0.01771 c.37.1.21 76354 1nn5A 215 0.01897 c.37.1.1 85892 1uj2A 252 0.01981 c.37.1.6 99452 1zd8A 227 0.02067 1viaA 175 0.02291 c.37.1.2 100754 1rz3A 201 0.02438 c.37.1.6 98132 1zinA 217 0.02465 c.37.1.1,g.41.2.1 31915,45178 2g1kA 176 0.02634 c.37.1.2 134519 2eu8A 216 0.02724 1kdoA 227 0.02738 c.37.1.1 68478 1rkbA 173 0.03111 c.37.1.1 111854 2ax4A 198 0.03641 1xrjA 261 0.04106 c.37.1.6 122256 1m7gA 211 0.05145 c.37.1.4 78724 2qgnA 322 0.05797 3crrA 323 0.06197 1ckeA 227 0.06680 c.37.1.1 31846 1zuhA 168 0.06701 2p5tB 253 0.06847 2grjA 192 0.07221 1jjvA 206 0.1198 c.37.1.1 71698 2gzaA 361 0.1663 1kagA 173 0.2560 c.37.1.2 72249 1a7jA 290 0.3633 c.37.1.6 31952 1np6A 174 0.3770 c.37.1.10 85954 1in6A 334 0.4395 a.4.5.11,c.37.1.20 62601,62602 2p67A 341 0.4524 1xjcA 169 0.4737 c.37.1.10 115387 1in4A 334 0.4806 a.4.5.11,c.37.1.20 62597,62598 1sq5A 308 0.5437 c.37.1.6 105882 1xx6A 191 0.5497 c.37.1.24,g.39.1.14 116139,116140 2oap1 511 0.6389 1g6oA 330 0.6463 c.37.1.11 32430 2f1rA 171 0.6466 1l2tA 235 0.6669 c.37.1.12 73514 2qm8A 337 0.6793 2pt7A 330 0.7119 2eyuA 261 0.7381 2pzeA 229 0.7537 2qy9A 309 0.8305 1lv7A 257 1.004 c.37.1.20 78232 3b9qA 302 1.005 2bbsA 290 1.082 1x6vA 630 1.116 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2cbzA 237 1.144 1tq4A 413 1.186 c.37.1.8 107201 1zu4A 320 1.274 2ff7A 247 1.277 c.37.1.12 133377 2ixeA 271 1.285 2hf9A 226 1.291 1rj9A 304 1.326 a.24.13.1,c.37.1.10 97553,97554 2pmkA 243 1.405 2og2A 359 1.559 2nq2C 253 1.697 1htwA 158 1.782 c.37.1.18 71083 2ze7A 253 1.886 1bif 469 2.045 2a5yB 549 2.155 1vplA 256 2.214 c.37.1.12 113966 2orwA 184 2.236 2ihyA 279 2.263 1sgwA 214 2.284 c.37.1.12 105541 1njgA 250 2.294 c.37.1.20 85785 1n2zA 245 2.298 c.92.2.2 79865 1z47A 355 2.308 1b0uA 262 2.337 c.37.1.12 32370 1xewX 182 2.352 c.37.1.12 115235 1bifA 469 2.378 c.37.1.7,c.60.1.4 31961,34003 1t9hA 307 2.417 b.40.4.5,c.37.1.8 112358,112359 2it1A 362 2.424 1d2nA 272 2.471 c.37.1.20 32428 1w44A 331 2.515 c.37.1.11 114147 1ji0A 240 2.609 c.37.1.12 71665 1ye8A 178 2.819 c.37.1.11 123010 1dekA 241 2.982 c.37.1.1 31842 2bjvA 265 3.054 1g291 372 3.100 1ls1A 295 3.277 a.24.13.1,c.37.1.10 78170,78171 2pcjA 224 3.338 2gxaA 274 3.362 1oxxK 353 3.588 b.40.6.3,c.37.1.12 93715,93716 2vhjA 331 3.819 2c9oA 456 3.905 1n4aA 252 4.131 c.92.2.2 85317 2fnaA 357 4.303 a.4.5.11,c.37.1.20 133809,133810 1gl6A 436 4.376 c.37.1.11 70259 1a7j 290 4.538 2j69A 695 4.602 1g6hA 257 4.683 c.37.1.12 60318 1tueA 212 4.791 c.37.1.20 107323 2ga8A 359 4.815 1g8pA 350 4.853 c.37.1.20 60376 1odfA 290 4.938 c.37.1.6 92782 2qgzA 308 5.075 1sxjA 511 5.496 a.80.1.1,c.37.1.20 106081,106082 2d2eA 250 6.053 1ky3A 182 6.246 c.37.1.8 73193 1pujA 282 6.300 c.37.1.8 88294 2qi9C 249 6.420 3c5cA 187 6.618 2o5vA 359 6.789 1vmaA 306 7.174 a.24.13.1,c.37.1.10 108887,108888 1nijA 318 7.406 c.37.1.10,d.237.1.1 85741,85742 2v26A 784 7.684 2bkhA 814 7.719 1tca 317 7.742 1h65A 270 7.936 c.37.1.8 65640 1w5tA 412 8.121 a.4.5.11,c.37.1.20 114255,114256 1sxjC 340 8.514 a.80.1.1,c.37.1.20 106085,106086 1knxA 312 8.577 c.98.2.1,c.91.1.2 77459,77460 2pjzA 263 8.699 1w4rA 195 8.793 2r2aA 199 8.947 2hxsA 178 9.890 1sxjE 354 9.912 a.80.1.1,c.37.1.20 106089,106090 1a5tA 334 9.925 a.80.1.1,c.37.1.20 18450,32423 2dkhA 639 10.83 1e9rA 437 11.66 c.37.1.11 64827 1u0jA 267 11.66 c.37.1.20 107546 1ko7A 314 11.99 c.98.2.1,c.91.1.2 72797,72798 1w7jA 795 12.11 b.34.3.1,c.37.1.9 120688,120689 2r44A 331 13.84 1u94A 356 14.10 c.37.1.11,d.48.1.1 107743,107744 1f6bA 198 14.16 c.37.1.8 64986 1j8mF 297 14.49 a.24.13.1,c.37.1.10 62742,62743 2akaB 299 15.10 c.37.1.8 126914 2q3hA 201 15.73 1w9iA 770 15.75 1fnnA 389 16.24 a.4.5.11,c.37.1.20 16129,32426 2iutA 574 16.85 1nlfA 279 16.86 c.37.1.11 85850 1svmA 377 17.47 c.37.1.20 112126 2g6bA 180 17.53 c.37.1.8 134701 1ihuA 589 18.26 c.37.1.10,c.37.1.10 62394,62395 1efdN 266 18.91 c.92.2.1 35597 1ionA 243 19.19 c.37.1.10 62633 3bs4A 260 19.30 2q8pA 260 19.54 2zejA 184 19.81 2b8tA 223 19.81 c.37.1.24,g.39.1.14 128109,128110 2bonA 332 19.88 2chgA 226 20.29 2o2gA 223 20.83 1cr1A 296 21.36 c.37.1.11 32286 3bosA 242 21.68 1a5t 334 21.75 2hjgA 436 21.79 1yqtA 538 21.89 3bwdD 182 22.10 1zj6A 187 23.36 c.37.1.8 125145 1z08A 170 23.57 c.37.1.8 124303 2cvhA 220 23.86 1nofA 383 24.26 b.71.1.2,c.1.8.3 92020,92021 2gjsA 176 24.91 c.37.1.8 135287 2bekA 257 25.44 3bfkA 181 25.92 1g3qA 237 26.50 c.37.1.10 60237 2ozeA 298 26.65 1mh1A 186 27.27 c.37.1.8 32002 2p5sA 199 28.31 1gg4A 452 28.68 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 2gcoA 201 28.71 2qjwA 176 30.99 2rexB 197 32.16 1cp2A 269 32.43 c.37.1.10 32269 3c4vA 426 34.08 1jbkA 195 34.46 c.37.1.20 71631 2zadA 345 36.03 2rebA 352 37.17 c.37.1.11,d.48.1.1 32282,38767 1wcv1 257 38.75 1vf8A 377 38.90 c.1.8.5,d.26.3.1 120029,120030 1m7bA 184 40.38 c.37.1.8 74572 2chuA 296 42.43 c.92.2.4 130485 1m1zA 513 42.65 c.26.2.1,d.153.1.1 78457,78458 2cukA 311 42.95 1e8cA 498 43.41 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1kngA 156 46.48 c.47.1.10 72777 2aebA 322 46.53 c.42.1.1 126617 2dpxA 174 47.01 2b8wA 328 47.14 3b9pA 297 47.39 2qmoA 220 47.47 2r7aA 256 49.58 2r6fA 972 50.45 2h17A 181 52.00 1z06A 189 52.88 c.37.1.8 124301 2yv5A 302 53.67 1xp8A 366 55.23 c.37.1.11,d.48.1.1 115735,115736 2bm8A 236 56.50 c.66.1.50 128771 2p74A 263 56.76 2oblA 347 58.53 1g41A 444 59.91 c.37.1.20 32450 2j8mA 172 61.91 2fz4A 237 62.08 c.37.1.19 134419 1f2tA 149 62.81 c.37.1.12 32373 2i1qA 322 63.79 a.60.4.1,c.37.1.11 136984,136985 1tf5A 844 64.67 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2hu5A 582 65.90 b.69.7.2,c.69.1.33 136763,136764 2c8vA 288 65.92 c.37.1.10 130128 1ju2A 536 66.60 c.3.1.2,d.16.1.1 77169,77170 1ufoA 238 66.95 c.69.1.27 99344 2p65A 187 68.46 2am1A 454 68.98 1z2aA 168 71.93 c.37.1.8 124374 2hcyA 347 72.15 3co5A 143 74.24 1vcoA 550 74.96 c.23.16.1,c.37.1.10 108508,108509 1jcfA 344 75.29 c.55.1.1,c.55.1.1 62878,62879 1uufA 369 75.79 b.35.1.2,c.2.1.1 100006,100007 1gdhA 320 75.83 c.2.1.4,c.23.12.1 30095,31355 2dpyA 438 76.55 1x3sA 195 76.57 c.37.1.8 121670 2a5dA 175 76.74 c.37.1.8 126172 1b6g 310 76.80 1oi7A 288 77.80 c.2.1.8,c.23.4.1 87049,87050 1n0wA 243 80.01 c.37.1.11 79772 2etvA 346 81.21 c.92.2.4 132372 1r8sA 164 81.78 c.37.1.8 97247 1jmkC 230 82.02 c.69.1.22 71747 2gk6A 624 82.43 1pswA 348 83.45 c.87.1.7 88287 1sznA 417 84.21 b.71.1.1,c.1.8.1 106162,106163 1g55A 343 85.26 c.66.1.26 34247 1d3vA 323 85.32 c.42.1.1 32559 2r3sA 335 87.69 1xd8A 289 87.81