# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gky 187 6.67e-05 1kjwA 295 7.78e-05 b.34.2.1,c.37.1.1 68643,68644 2j41A 207 0.000118 2pbrA 195 0.000125 1ex7A 186 0.000154 c.37.1.1 59537 1znwA 207 0.000166 c.37.1.1 125412 2qorA 204 0.000177 1kgdA 180 0.000262 c.37.1.1 68582 4tmkA 213 0.000593 c.37.1.1 31930 2ccjA 205 0.000613 2z0hA 197 0.000885 1p5zB 263 0.000987 c.37.1.1 87815 1p6xA 334 0.001954 c.37.1.1 94195 1gtvA 214 0.002321 c.37.1.1 70537 1ki9A 192 0.003578 c.37.1.1 84404 2vp4A 230 0.004855 2an9A 207 0.005119 c.37.1.1 127037 2c95A 196 0.006153 1of1A 376 0.007706 c.37.1.1 103924 1khtA 192 0.008180 c.37.1.1 84401 1s96A 219 0.008911 c.37.1.1 98740 1t0hB 224 0.009172 c.37.1.1 106208 2axpA 173 0.009813 c.37.1.1 127497 2qt1A 207 0.01044 2bwjA 199 0.01158 2cdnA 201 0.01171 c.37.1.1 130289 1qf9A 194 0.01288 c.37.1.1 31848 1ukzA 203 0.01391 c.37.1.1 31840 1e2kA 331 0.01582 c.37.1.1 31854 1zm7A 230 0.01737 2plrA 213 0.03049 2pezA 179 0.03135 1ukz 203 0.03355 2rhmA 193 0.03877 2bdtA 189 0.04050 c.37.1.25 128344 2yvuA 186 0.04562 1e4yA 214 0.04605 c.37.1.1,g.41.2.1 31901,45181 2pt5A 168 0.05035 1knqA 175 0.05537 c.37.1.17 72786 1qhxA 178 0.07133 c.37.1.3 31936 3tmkA 216 0.08281 c.37.1.1 31920 1akyA 220 0.09770 c.37.1.1,g.41.2.1 31896,45197 2rgxA 206 0.1005 3be4A 217 0.1049 1vhtA 218 0.1310 c.37.1.1 100700 1y63A 184 0.1546 c.37.1.1 116494 1zin 217 0.1636 1ak2A 233 0.1649 c.37.1.1,g.41.2.1 31894,45195 3c8uA 208 0.1745 2eu8A 216 0.2055 1e6cA 173 0.2145 c.37.1.2 59296 2iyvA 184 0.2216 c.37.1.2 137812 2f6rA 281 0.2232 2ak3A 226 0.2257 c.37.1.1,g.41.2.1 31892,45193 1xrjA 261 0.2698 c.37.1.6 122256 1kdoA 227 0.2778 c.37.1.1 68478 1uj2A 252 0.2850 c.37.1.6 99452 1ly1A 181 0.2929 c.37.1.1 74334 1nn5A 215 0.3451 c.37.1.1 85892 2qgnA 322 0.3564 1ltqA 301 0.3618 c.108.1.9,c.37.1.1 78208,78209 1viaA 175 0.3722 c.37.1.2 100754 1zd8A 227 0.3821 1rkbA 173 0.4234 c.37.1.1 111854 2g1kA 176 0.4278 c.37.1.2 134519 2ax4A 198 0.4362 1zinA 217 0.4707 c.37.1.1,g.41.2.1 31915,45178 1rz3A 201 0.5233 c.37.1.6 98132 2p5tB 253 0.5588 1m7gA 211 0.5833 c.37.1.4 78724 1ckeA 227 0.5933 c.37.1.1 31846 1gvnB 287 0.8130 c.37.1.21 76354 1zuhA 168 0.8647 2grjA 192 0.9258 1jjvA 206 1.075 c.37.1.1 71698 2og2A 359 1.308 1in4A 334 1.571 a.4.5.11,c.37.1.20 62597,62598 2gzaA 361 1.582 1kagA 173 2.002 c.37.1.2 72249 2eyuA 261 2.369 1sq5A 308 2.578 c.37.1.6 105882 1gl6A 436 3.095 c.37.1.11 70259 1lv7A 257 3.168 c.37.1.20 78232 1a7jA 290 3.171 c.37.1.6 31952 1xx6A 191 3.217 c.37.1.24,g.39.1.14 116139,116140 3crrA 323 3.496 1xjcA 169 3.932 c.37.1.10 115387 1l2tA 235 4.451 c.37.1.12 73514 2p67A 341 5.015 3b9qA 302 5.025 2pt7A 330 5.032 1g6oA 330 5.615 c.37.1.11 32430 2a5yB 549 5.685 2qy9A 309 5.910 2qm8A 337 5.916 1d2nA 272 5.926 c.37.1.20 32428 2oap1 511 6.253 2f1rA 171 6.483 2pzeA 229 6.744 1in6A 334 7.080 a.4.5.11,c.37.1.20 62601,62602 1np6A 174 7.148 c.37.1.10 85954 1b0uA 262 7.170 c.37.1.12 32370 2j69A 695 7.766 1d3vA 323 7.870 c.42.1.1 32559 2it1A 362 7.909 2bbsA 290 8.035 2hf9A 226 8.412 1h65A 270 8.639 c.37.1.8 65640 2pmkA 243 8.911 2qi9C 249 9.786 2ze7A 253 10.21 2cbzA 237 10.55 2orwA 184 10.79 2nq2C 253 11.45 2ff7A 247 11.85 c.37.1.12 133377 1n2zA 245 11.94 c.92.2.2 79865 1sgwA 214 12.22 c.37.1.12 105541 1rj9A 304 12.24 a.24.13.1,c.37.1.10 97553,97554 1vplA 256 12.45 c.37.1.12 113966 2ihyA 279 12.79 3bblA 287 13.25 2bkhA 814 13.40 2bjvA 265 13.64 1z47A 355 13.65 1sxjA 511 14.03 a.80.1.1,c.37.1.20 106081,106082 2c9oA 456 14.17 1njgA 250 14.18 c.37.1.20 85785 2pcjA 224 14.76 2gxaA 274 14.91 1tueA 212 14.91 c.37.1.20 107323 2o5vA 359 15.07 1g291 372 15.38 1ji0A 240 16.11 c.37.1.12 71665 3bosA 242 16.11 1xewX 182 16.22 c.37.1.12 115235 2ixeA 271 16.42 1g6hA 257 16.97 c.37.1.12 60318 1t9hA 307 17.14 b.40.4.5,c.37.1.8 112358,112359 1x6vA 630 17.18 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1a7j 290 17.47 2pjzA 263 17.85 1n4aA 252 17.95 c.92.2.2 85317 1htwA 158 18.17 c.37.1.18 71083 1bif 469 18.36 1ra0A 430 19.21 b.92.1.2,c.1.9.5 111756,111757 1sznA 417 19.37 b.71.1.1,c.1.8.1 106162,106163 1tq4A 413 19.44 c.37.1.8 107201 2cvhA 220 20.85 1w5tA 412 20.96 a.4.5.11,c.37.1.20 114255,114256 1yqtA 538 21.01 1g8pA 350 21.02 c.37.1.20 60376 2rebA 352 21.74 c.37.1.11,d.48.1.1 32282,38767 2oblA 347 22.35 1zu4A 320 22.95 1e9rA 437 23.02 c.37.1.11 64827 2vhjA 331 23.13 2v26A 784 23.19 1sxjC 340 23.27 a.80.1.1,c.37.1.20 106085,106086 2d2eA 250 23.42 1ls1A 295 24.14 a.24.13.1,c.37.1.10 78170,78171 1bifA 469 24.81 c.37.1.7,c.60.1.4 31961,34003 2qgzA 308 25.94 2fnaA 357 25.98 a.4.5.11,c.37.1.20 133809,133810 2dqsA 995 26.32 1oxxK 353 26.86 b.40.6.3,c.37.1.12 93715,93716 1sxjE 354 28.47 a.80.1.1,c.37.1.20 106089,106090 1bu8A 452 29.34 b.12.1.2,c.69.1.19 23647,34795 1tca 317 29.94 2dkhA 639 30.43 1pujA 282 33.66 c.37.1.8 88294 1w4rA 195 34.42 1n8kA 374 35.02 b.35.1.2,c.2.1.1 80298,80299 1kyzA 365 35.06 a.4.5.29,c.66.1.12 73312,73313 2qu8A 228 35.25 1ky3A 182 35.34 c.37.1.8 73193 2r2aA 199 35.90 1lf6A 684 38.37 a.102.1.5,b.30.5.5 77918,77919 1cp2A 269 40.35 c.37.1.10 32269 2nxwA 565 41.72 3c5cA 187 42.03 2q8pA 260 44.00 1u94A 356 44.13 c.37.1.11,d.48.1.1 107743,107744 1puiA 210 44.18 c.37.1.8 88292 2dr3A 247 46.87 1yhtA 367 48.55 c.1.8.6 123213 1ju2A 536 48.89 c.3.1.2,d.16.1.1 77169,77170 2b8tA 223 49.06 c.37.1.24,g.39.1.14 128109,128110 2o2gA 223 49.62 2hxsA 178 49.88 1e8cA 498 50.37 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1w7jA 795 50.37 b.34.3.1,c.37.1.9 120688,120689 2r44A 331 50.42 1ye8A 178 50.49 c.37.1.11 123010 3bs4A 260 50.73 1vdzA 588 51.28 1a5tA 334 52.03 a.80.1.1,c.37.1.20 18450,32423 1zj6A 187 52.38 c.37.1.8 125145 2r7aA 256 52.44 1u0jA 267 52.69 c.37.1.20 107546 1j8mF 297 54.84 a.24.13.1,c.37.1.10 62742,62743 1vmaA 306 56.31 a.24.13.1,c.37.1.10 108887,108888 2rexB 197 56.32 1qf5A 431 57.63 c.37.1.10 32212 2q3hA 201 58.89 1wpgA 994 59.17 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 114806,114807,114808,114809 1cr1A 296 60.48 c.37.1.11 32286 2bonA 332 61.21 1vptA 348 61.69 c.66.1.25 34207 1rhsA 296 61.78 c.46.1.2,c.46.1.2 32703,32704 1svmA 377 62.48 c.37.1.20 112126 2ga8A 359 62.65 2yv5A 302 64.00 2i2wA 212 66.38 1pixA 587 66.99 c.14.1.4,c.14.1.4 118578,118579 1fnnA 389 68.46 a.4.5.11,c.37.1.20 16129,32426 1w44A 331 68.68 c.37.1.11 114147 1icpA 376 68.73 c.1.4.1 62270 1efdN 266 69.23 c.92.2.1 35597 1odfA 290 72.54 c.37.1.6 92782 1jbkA 195 73.24 c.37.1.20 71631 2chgA 226 73.92 1w9iA 770 74.24 3c4vA 426 75.91 2csuA 457 76.51 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1wcv1 257 77.35 2aebA 322 77.61 c.42.1.1 126617 1nlfA 279 78.29 c.37.1.11 85850 1f6bA 198 79.04 c.37.1.8 64986 2zejA 184 84.55 1dekA 241 85.94 c.37.1.1 31842 2z43A 324 86.41 3bwdD 182 86.88