# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1kjwA 295 1.49e-07 b.34.2.1,c.37.1.1 68643,68644 1gky 187 1.89e-07 2pbrA 195 2.67e-07 2j41A 207 3.93e-07 1kgdA 180 4.87e-07 c.37.1.1 68582 1ex7A 186 6.50e-07 c.37.1.1 59537 2qorA 204 8.05e-07 1znwA 207 1.11e-06 c.37.1.1 125412 1p5zB 263 3.66e-06 c.37.1.1 87815 1p6xA 334 4.64e-06 c.37.1.1 94195 2z0hA 197 6.99e-06 2ccjA 205 7.73e-06 4tmkA 213 1.02e-05 c.37.1.1 31930 1gtvA 214 1.70e-05 c.37.1.1 70537 1ki9A 192 3.04e-05 c.37.1.1 84404 1of1A 376 3.45e-05 c.37.1.1 103924 2vp4A 230 3.53e-05 2c95A 196 5.56e-05 2an9A 207 5.82e-05 c.37.1.1 127037 1khtA 192 6.21e-05 c.37.1.1 84401 1t0hB 224 6.56e-05 c.37.1.1 106208 1e2kA 331 8.36e-05 c.37.1.1 31854 2bwjA 199 0.000175 1zm7A 230 0.000181 1ukzA 203 0.000185 c.37.1.1 31840 1s96A 219 0.000202 c.37.1.1 98740 1qf9A 194 0.000231 c.37.1.1 31848 2qt1A 207 0.000244 2cdnA 201 0.000374 c.37.1.1 130289 2axpA 173 0.000492 c.37.1.1 127497 1ukz 203 0.000624 2plrA 213 0.000704 1qhxA 178 0.000763 c.37.1.3 31936 2rhmA 193 0.000802 1knqA 175 0.000912 c.37.1.17 72786 2bdtA 189 0.001137 c.37.1.25 128344 2yvuA 186 0.001920 2pezA 179 0.002114 2rgxA 206 0.002522 1akyA 220 0.002747 c.37.1.1,g.41.2.1 31896,45197 1e4yA 214 0.003485 c.37.1.1,g.41.2.1 31901,45181 3be4A 217 0.003490 1vhtA 218 0.004172 c.37.1.1 100700 1zin 217 0.004805 1y63A 184 0.005290 c.37.1.1 116494 3tmkA 216 0.005541 c.37.1.1 31920 1ak2A 233 0.005657 c.37.1.1,g.41.2.1 31894,45195 2f6rA 281 0.006541 2ak3A 226 0.007001 c.37.1.1,g.41.2.1 31892,45193 1e6cA 173 0.007231 c.37.1.2 59296 2pt5A 168 0.008763 3c8uA 208 0.008954 1ltqA 301 0.009449 c.108.1.9,c.37.1.1 78208,78209 2iyvA 184 0.01046 c.37.1.2 137812 1uj2A 252 0.01303 c.37.1.6 99452 1gvnB 287 0.01314 c.37.1.21 76354 1nn5A 215 0.01354 c.37.1.1 85892 1kdoA 227 0.01472 c.37.1.1 68478 1zd8A 227 0.01601 1ly1A 181 0.01727 c.37.1.1 74334 2g1kA 176 0.01959 c.37.1.2 134519 1zinA 217 0.02039 c.37.1.1,g.41.2.1 31915,45178 1viaA 175 0.02048 c.37.1.2 100754 2eu8A 216 0.02172 1rz3A 201 0.02315 c.37.1.6 98132 1rkbA 173 0.02389 c.37.1.1 111854 1xrjA 261 0.02447 c.37.1.6 122256 1m7gA 211 0.03079 c.37.1.4 78724 3crrA 323 0.03929 2p5tB 253 0.04166 2qgnA 322 0.04209 2ax4A 198 0.04401 1ckeA 227 0.05263 c.37.1.1 31846 2grjA 192 0.05326 1zuhA 168 0.05346 1jjvA 206 0.06394 c.37.1.1 71698 2gzaA 361 0.1334 1a7jA 290 0.2073 c.37.1.6 31952 1kagA 173 0.2716 c.37.1.2 72249 1np6A 174 0.3145 c.37.1.10 85954 1xjcA 169 0.3504 c.37.1.10 115387 1l2tA 235 0.3709 c.37.1.12 73514 1xx6A 191 0.3958 c.37.1.24,g.39.1.14 116139,116140 1in6A 334 0.3979 a.4.5.11,c.37.1.20 62601,62602 1sq5A 308 0.4355 c.37.1.6 105882 2p67A 341 0.4431 1in4A 334 0.4462 a.4.5.11,c.37.1.20 62597,62598 1g6oA 330 0.4849 c.37.1.11 32430 2pzeA 229 0.5122 2oap1 511 0.5249 2f1rA 171 0.5369 2eyuA 261 0.5420 2pt7A 330 0.5629 2ff7A 247 0.7061 c.37.1.12 133377 2bbsA 290 0.7232 2cbzA 237 0.7997 2pmkA 243 0.8021 2qm8A 337 0.8108 2qy9A 309 0.8960 2ixeA 271 0.9075 3b9qA 302 1.108 1vplA 256 1.110 c.37.1.12 113966 1dekA 241 1.126 c.37.1.1 31842 1sgwA 214 1.135 c.37.1.12 105541 2ze7A 253 1.191 2nq2C 253 1.212 1b0uA 262 1.319 c.37.1.12 32370 1rj9A 304 1.341 a.24.13.1,c.37.1.10 97553,97554 1zu4A 320 1.382 1htwA 158 1.521 c.37.1.18 71083 2ihyA 279 1.527 2it1A 362 1.564 1z47A 355 1.583 2orwA 184 1.662 2a5yB 549 1.665 1ji0A 240 1.671 c.37.1.12 71665 1x6vA 630 1.686 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1lv7A 257 1.721 c.37.1.20 78232 1tq4A 413 1.763 c.37.1.8 107201 1g291 372 1.820 2pcjA 224 1.832 1njgA 250 1.895 c.37.1.20 85785 2og2A 359 1.898 2hf9A 226 1.911 1bif 469 1.938 1n2zA 245 1.980 c.92.2.2 79865 1d2nA 272 2.070 c.37.1.20 32428 1bifA 469 2.092 c.37.1.7,c.60.1.4 31961,34003 1ye8A 178 2.216 c.37.1.11 123010 1xewX 182 2.370 c.37.1.12 115235 1g6hA 257 2.409 c.37.1.12 60318 1w44A 331 2.584 c.37.1.11 114147 1a7j 290 2.592 2bjvA 265 2.730 2gxaA 274 2.752 1g8pA 350 2.813 c.37.1.20 60376 1t9hA 307 2.908 b.40.4.5,c.37.1.8 112358,112359 2ga8A 359 2.950 2d2eA 250 3.013 1oxxK 353 3.043 b.40.6.3,c.37.1.12 93715,93716 2vhjA 331 3.416 1n4aA 252 3.867 c.92.2.2 85317 2c9oA 456 3.898 1ls1A 295 3.961 a.24.13.1,c.37.1.10 78170,78171 1tca 317 4.248 2fnaA 357 4.559 a.4.5.11,c.37.1.20 133809,133810 1gl6A 436 4.571 c.37.1.11 70259 1odfA 290 4.613 c.37.1.6 92782 2j69A 695 4.736 1tueA 212 4.791 c.37.1.20 107323 2qi9C 249 4.939 2qgzA 308 4.994 1nijA 318 5.096 c.37.1.10,d.237.1.1 85741,85742 2pjzA 263 5.139 1ky3A 182 5.833 c.37.1.8 73193 1sxjA 511 6.227 a.80.1.1,c.37.1.20 106081,106082 2o5vA 359 6.511 1w4rA 195 6.860 2bkhA 814 7.112 1pujA 282 7.313 c.37.1.8 88294 1a5tA 334 7.407 a.80.1.1,c.37.1.20 18450,32423 1w5tA 412 7.816 a.4.5.11,c.37.1.20 114255,114256 2v26A 784 7.869 1sxjC 340 8.058 a.80.1.1,c.37.1.20 106085,106086 3c5cA 187 8.136 2dkhA 639 8.292 1sxjE 354 8.396 a.80.1.1,c.37.1.20 106089,106090 1knxA 312 8.726 c.98.2.1,c.91.1.2 77459,77460 1u94A 356 8.740 c.37.1.11,d.48.1.1 107743,107744 1h65A 270 8.845 c.37.1.8 65640 2r2aA 199 8.942 1e9rA 437 9.133 c.37.1.11 64827 1vmaA 306 10.14 a.24.13.1,c.37.1.10 108887,108888 2r44A 331 10.19 1nlfA 279 10.43 c.37.1.11 85850 1u0jA 267 10.45 c.37.1.20 107546 1yqtA 538 11.29 2o2gA 223 12.04 1w7jA 795 12.24 b.34.3.1,c.37.1.9 120688,120689 2b8tA 223 12.38 c.37.1.24,g.39.1.14 128109,128110 2q3hA 201 12.43 1w9iA 770 13.29 1svmA 377 13.60 c.37.1.20 112126 2hxsA 178 14.33 1j8mF 297 14.93 a.24.13.1,c.37.1.10 62742,62743 1ko7A 314 15.42 c.98.2.1,c.91.1.2 72797,72798 1fnnA 389 15.90 a.4.5.11,c.37.1.20 16129,32426 2bonA 332 17.23 2akaB 299 17.40 c.37.1.8 126914 1ihuA 589 17.56 c.37.1.10,c.37.1.10 62394,62395 2q8pA 260 18.09 1a5t 334 18.16 2chgA 226 18.35 1f6bA 198 19.05 c.37.1.8 64986 2iutA 574 19.20 1efdN 266 20.28 c.92.2.1 35597 3bosA 242 20.39 3bwdD 182 21.06 1cr1A 296 21.76 c.37.1.11 32286 2g6bA 180 22.96 c.37.1.8 134701 2cvhA 220 23.23 1mh1A 186 23.31 c.37.1.8 32002 2zejA 184 23.64 1nofA 383 24.12 b.71.1.2,c.1.8.3 92020,92021 1ionA 243 24.27 c.37.1.10 62633 2gcoA 201 25.01 2rebA 352 25.65 c.37.1.11,d.48.1.1 32282,38767 2hu5A 582 25.79 b.69.7.2,c.69.1.33 136763,136764 1z08A 170 26.05 c.37.1.8 124303 2bekA 257 26.14 2p5sA 199 26.26 2chuA 296 26.66 c.92.2.4 130485 3c4vA 426 27.29 3bfkA 181 27.48 2rexB 197 27.68 2qjwA 176 27.77 1g3qA 237 28.87 c.37.1.10 60237 1vf8A 377 29.47 c.1.8.5,d.26.3.1 120029,120030 1m7bA 184 29.93 c.37.1.8 74572 2ozeA 298 30.45 1zj6A 187 30.48 c.37.1.8 125145 3bs4A 260 31.96 1jbkA 195 33.22 c.37.1.20 71631 2aebA 322 34.12 c.42.1.1 126617 2zadA 345 36.28 1cp2A 269 36.51 c.37.1.10 32269 1gg4A 452 36.77 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1uxoA 192 37.56 c.69.1.31 108121 1b6g 310 38.03 1kngA 156 38.54 c.47.1.10 72777 1ufoA 238 39.20 c.69.1.27 99344 2r7aA 256 39.34 2gjsA 176 42.25 c.37.1.8 135287 1wcv1 257 44.39 2r6fA 972 44.84 1xp8A 366 45.79 c.37.1.11,d.48.1.1 115735,115736 1e8cA 498 46.00 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2hcyA 347 46.11 2yv5A 302 46.40 2qmoA 220 48.11 2hjgA 436 49.29 2bm8A 236 50.33 c.66.1.50 128771 2i1qA 322 50.33 a.60.4.1,c.37.1.11 136984,136985 2oblA 347 50.91 1l7aA 318 50.91 c.69.1.25 77772 1jmkC 230 51.65 c.69.1.22 71747 1m1zA 513 51.72 c.26.2.1,d.153.1.1 78457,78458 2h17A 181 52.09 1d3vA 323 52.65 c.42.1.1 32559 1lluA 342 54.25 b.35.1.2,c.2.1.1 91064,91065 2jbwA 386 54.37 1uufA 369 54.56 b.35.1.2,c.2.1.1 100006,100007 1iz0A 302 55.55 b.35.1.2,c.2.1.1 83821,83822 2c8vA 288 58.39 c.37.1.10 130128 5nulA 138 58.56 c.23.5.1 31191 2dpxA 174 58.81 1tf5A 844 58.96 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2am1A 454 59.24 1z06A 189 59.66 c.37.1.8 124301 2b8wA 328 60.82 2fz4A 237 63.50 c.37.1.19 134419 2p65A 187 63.74 2dpyA 438 63.75 2fdxA 138 64.52 c.23.5.1 31192 1ju2A 536 64.95 c.3.1.2,d.16.1.1 77169,77170 2p74A 263 65.02 3b9pA 297 65.64 2etvA 346 65.76 c.92.2.4 132372 2j8mA 172 68.05 2b7aA 293 68.23 1f8fA 371 68.28 b.35.1.2,c.2.1.1 83246,83247 2cf5A 357 68.55 1n0wA 243 71.28 c.37.1.11 79772 1z2aA 168 72.01 c.37.1.8 124374 1b6gA 310 72.98 c.69.1.8 34661 1vcoA 550 75.31 c.23.16.1,c.37.1.10 108508,108509 3co5A 143 77.76 1pswA 348 77.85 c.87.1.7 88287 1xd8A 289 78.40 1f2tA 149 81.52 c.37.1.12 32373 1oi7A 288 81.77 c.2.1.8,c.23.4.1 87049,87050 1n8kA 374 86.18 b.35.1.2,c.2.1.1 80298,80299 2cukA 311 86.19 1tuoA 464 88.30 1jalA 363 88.64 c.37.1.8,d.15.10.2 84138,84139 1qfoA 119 89.12 b.1.1.1 19708 1mugA 168 89.12 c.18.1.2 31030