# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1kjwA 295 7.20e-06 b.34.2.1,c.37.1.1 68643,68644 1gky 187 1.06e-05 2pbrA 195 1.62e-05 2j41A 207 1.74e-05 1kgdA 180 1.96e-05 c.37.1.1 68582 2qorA 204 2.53e-05 1ex7A 186 2.61e-05 c.37.1.1 59537 1znwA 207 5.71e-05 c.37.1.1 125412 1p5zB 263 0.000192 c.37.1.1 87815 1p6xA 334 0.000220 c.37.1.1 94195 2ccjA 205 0.000290 2z0hA 197 0.000305 4tmkA 213 0.000305 c.37.1.1 31930 1gtvA 214 0.000763 c.37.1.1 70537 2vp4A 230 0.000777 2c95A 196 0.001207 1ki9A 192 0.001325 c.37.1.1 84404 2an9A 207 0.001511 c.37.1.1 127037 1t0hB 224 0.001614 c.37.1.1 106208 1e2kA 331 0.002108 c.37.1.1 31854 1ukzA 203 0.002114 c.37.1.1 31840 1of1A 376 0.002292 c.37.1.1 103924 1khtA 192 0.002522 c.37.1.1 84401 2bwjA 199 0.002792 2qt1A 207 0.003177 1qf9A 194 0.003256 c.37.1.1 31848 1s96A 219 0.003553 c.37.1.1 98740 2cdnA 201 0.005186 c.37.1.1 130289 1zm7A 230 0.005922 2axpA 173 0.01048 c.37.1.1 127497 2plrA 213 0.01068 1ukz 203 0.01150 2rhmA 193 0.01883 1qhxA 178 0.02311 c.37.1.3 31936 1e4yA 214 0.02380 c.37.1.1,g.41.2.1 31901,45181 2yvuA 186 0.02455 2rgxA 206 0.02834 3be4A 217 0.02849 2bdtA 189 0.03038 c.37.1.25 128344 3tmkA 216 0.03357 c.37.1.1 31920 1knqA 175 0.03552 c.37.1.17 72786 2f6rA 281 0.03788 1akyA 220 0.04433 c.37.1.1,g.41.2.1 31896,45197 2pezA 179 0.05174 1ak2A 233 0.05863 c.37.1.1,g.41.2.1 31894,45195 1zin 217 0.06316 1y63A 184 0.07197 c.37.1.1 116494 2ak3A 226 0.09688 c.37.1.1,g.41.2.1 31892,45193 2eu8A 216 0.1009 1vhtA 218 0.1021 c.37.1.1 100700 2pt5A 168 0.1088 3c8uA 208 0.1312 1e6cA 173 0.1326 c.37.1.2 59296 1rz3A 201 0.1356 c.37.1.6 98132 1gvnB 287 0.1362 c.37.1.21 76354 1zinA 217 0.1461 c.37.1.1,g.41.2.1 31915,45178 1viaA 175 0.1553 c.37.1.2 100754 1zd8A 227 0.1572 1xrjA 261 0.1621 c.37.1.6 122256 1kdoA 227 0.1811 c.37.1.1 68478 1ltqA 301 0.1831 c.108.1.9,c.37.1.1 78208,78209 1nn5A 215 0.2240 c.37.1.1 85892 1ckeA 227 0.2248 c.37.1.1 31846 1m7gA 211 0.2416 c.37.1.4 78724 1ly1A 181 0.2498 c.37.1.1 74334 1uj2A 252 0.2582 c.37.1.6 99452 1rkbA 173 0.3220 c.37.1.1 111854 2iyvA 184 0.3249 c.37.1.2 137812 2g1kA 176 0.3383 c.37.1.2 134519 2ax4A 198 0.4723 1a7jA 290 0.4881 c.37.1.6 31952 2qgnA 322 0.5139 1zuhA 168 0.5528 3crrA 323 0.6898 2grjA 192 0.8272 1jjvA 206 0.9882 c.37.1.1 71698 2gzaA 361 1.012 2p5tB 253 1.028 1in4A 334 1.305 a.4.5.11,c.37.1.20 62597,62598 1kagA 173 1.368 c.37.1.2 72249 1in6A 334 2.371 a.4.5.11,c.37.1.20 62601,62602 1sq5A 308 2.420 c.37.1.6 105882 1lv7A 257 2.605 c.37.1.20 78232 1rj9A 304 2.912 a.24.13.1,c.37.1.10 97553,97554 2qy9A 309 2.939 1xx6A 191 3.016 c.37.1.24,g.39.1.14 116139,116140 1np6A 174 3.095 c.37.1.10 85954 1l2tA 235 3.178 c.37.1.12 73514 3b9qA 302 3.202 2f1rA 171 3.258 1a7j 290 3.261 2p67A 341 3.267 2oap1 511 3.327 2qm8A 337 3.850 2pzeA 229 4.144 2eyuA 261 4.249 1g6oA 330 4.598 c.37.1.11 32430 2orwA 184 4.827 2bbsA 290 4.981 1zu4A 320 5.067 1tq4A 413 5.550 c.37.1.8 107201 2cbzA 237 6.353 1xewX 182 6.361 c.37.1.12 115235 1x6vA 630 6.543 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2pt7A 330 6.574 2ihyA 279 6.702 2ixeA 271 6.712 1xjcA 169 6.861 c.37.1.10 115387 1sxjA 511 7.530 a.80.1.1,c.37.1.20 106081,106082 2ff7A 247 7.642 c.37.1.12 133377 1htwA 158 7.811 c.37.1.18 71083 2nq2C 253 7.943 2pmkA 243 8.239 1ky3A 182 8.857 c.37.1.8 73193 2gxaA 274 9.754 2og2A 359 10.18 2j69A 695 10.59 1d2nA 272 10.59 c.37.1.20 32428 1n2zA 245 10.73 c.92.2.2 79865 1ls1A 295 11.73 a.24.13.1,c.37.1.10 78170,78171 2ze7A 253 12.02 1e9rA 437 13.02 c.37.1.11 64827 2bjvA 265 13.22 1gl6A 436 14.08 c.37.1.11 70259 1b0uA 262 14.74 c.37.1.12 32370 1z47A 355 14.91 1pujA 282 15.20 c.37.1.8 88294 1w44A 331 15.35 c.37.1.11 114147 1tueA 212 15.80 c.37.1.20 107323 2a5yB 549 16.50 2d2eA 250 16.58 2it1A 362 16.59 1bif 469 16.61 2c9oA 456 16.75 1oxxK 353 17.21 b.40.6.3,c.37.1.12 93715,93716 1dekA 241 17.32 c.37.1.1 31842 2pcjA 224 17.60 2qgzA 308 18.19 2r44A 331 18.51 1bifA 469 18.90 c.37.1.7,c.60.1.4 31961,34003 1g8pA 350 19.02 c.37.1.20 60376 1w5tA 412 19.14 a.4.5.11,c.37.1.20 114255,114256 1odfA 290 19.28 c.37.1.6 92782 2hjgA 436 19.71 1njgA 250 20.29 c.37.1.20 85785 1g291 372 20.31 1ji0A 240 20.39 c.37.1.12 71665 1n4aA 252 20.88 c.92.2.2 85317 1sgwA 214 20.93 c.37.1.12 105541 2hf9A 226 21.00 1t9hA 307 21.02 b.40.4.5,c.37.1.8 112358,112359 3c5cA 187 21.17 1tca 317 21.26 2fnaA 357 21.43 a.4.5.11,c.37.1.20 133809,133810 2vhjA 331 21.73 1vplA 256 22.70 c.37.1.12 113966 1nijA 318 23.94 c.37.1.10,d.237.1.1 85741,85742 1vmaA 306 24.60 a.24.13.1,c.37.1.10 108887,108888 1knxA 312 25.71 c.98.2.1,c.91.1.2 77459,77460 1sxjE 354 26.00 a.80.1.1,c.37.1.20 106089,106090 1z08A 170 26.06 c.37.1.8 124303 1ye8A 178 28.28 c.37.1.11 123010 2ga8A 359 29.02 2bkhA 814 29.16 1ko7A 314 29.99 c.98.2.1,c.91.1.2 72797,72798 1h65A 270 31.29 c.37.1.8 65640 2r2aA 199 31.35 1efdN 266 31.61 c.92.2.1 35597 2dkhA 639 34.50 2bm8A 236 34.87 c.66.1.50 128771 2q8pA 260 36.24 2o5vA 359 36.51 1j8mF 297 36.62 a.24.13.1,c.37.1.10 62742,62743 2hxsA 178 38.06 1fnnA 389 38.96 a.4.5.11,c.37.1.20 16129,32426 1u0jA 267 40.59 c.37.1.20 107546 1w7jA 795 41.73 b.34.3.1,c.37.1.9 120688,120689 2qi9C 249 42.06 2akaB 299 42.20 c.37.1.8 126914 2g6bA 180 43.66 c.37.1.8 134701 2b8wA 328 44.59 1w9iA 770 44.75 1g6hA 257 45.98 c.37.1.12 60318 2ip2A 334 46.57 1a5tA 334 46.83 a.80.1.1,c.37.1.20 18450,32423 1w4rA 195 47.53 2hu5A 582 49.66 b.69.7.2,c.69.1.33 136763,136764 2v26A 784 50.78 2o2gA 223 52.63 2cukA 311 53.12 1vf8A 377 53.83 c.1.8.5,d.26.3.1 120029,120030 2pjzA 263 54.38 2q3hA 201 55.19 2zejA 184 56.38 2iutA 574 57.98 2bonA 332 59.43 1l1eA 287 62.05 c.66.1.18 73454 1u94A 356 63.50 c.37.1.11,d.48.1.1 107743,107744 1zj6A 187 64.52 c.37.1.8 125145 2etvA 346 65.19 c.92.2.4 132372 1sxjC 340 65.34 a.80.1.1,c.37.1.20 106085,106086 3bwdD 182 65.93 1mh1A 186 67.28 c.37.1.8 32002 3b9pA 297 70.00 1a5t 334 71.00 2qjwA 176 71.24 2pi6A 361 73.36 1nofA 383 74.61 b.71.1.2,c.1.8.3 92020,92021 2gcoA 201 74.90 1svmA 377 74.94 c.37.1.20 112126 1f6bA 198 75.30 c.37.1.8 64986 3bfkA 181 79.81 1xtpA 254 81.69 c.66.1.42 116031 2gjsA 176 83.44 c.37.1.8 135287 3c4vA 426 84.57 1jmkC 230 85.17 c.69.1.22 71747 2aebA 322 85.90 c.42.1.1 126617 1m7bA 184 87.51 c.37.1.8 74572 1ihuA 589 89.51 c.37.1.10,c.37.1.10 62394,62395