# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1kjwA 295 6.54e-08 b.34.2.1,c.37.1.1 68643,68644 1gky 187 1.15e-07 2pbrA 195 1.26e-07 2j41A 207 2.64e-07 1kgdA 180 2.98e-07 c.37.1.1 68582 2qorA 204 3.09e-07 1ex7A 186 3.49e-07 c.37.1.1 59537 1znwA 207 7.60e-07 c.37.1.1 125412 4tmkA 213 2.99e-06 c.37.1.1 31930 1p5zB 263 3.12e-06 c.37.1.1 87815 1p6xA 334 4.97e-06 c.37.1.1 94195 2ccjA 205 5.13e-06 1gtvA 214 7.52e-06 c.37.1.1 70537 2z0hA 197 8.71e-06 2vp4A 230 2.62e-05 1ki9A 192 3.08e-05 c.37.1.1 84404 1of1A 376 3.09e-05 c.37.1.1 103924 2an9A 207 3.31e-05 c.37.1.1 127037 2c95A 196 3.73e-05 1e2kA 331 5.73e-05 c.37.1.1 31854 1t0hB 224 5.94e-05 c.37.1.1 106208 1qf9A 194 7.66e-05 c.37.1.1 31848 1s96A 219 8.07e-05 c.37.1.1 98740 1khtA 192 8.24e-05 c.37.1.1 84401 1ukzA 203 8.80e-05 c.37.1.1 31840 2bwjA 199 9.47e-05 2qt1A 207 0.000149 2cdnA 201 0.000254 c.37.1.1 130289 2plrA 213 0.000354 1zm7A 230 0.000359 1ukz 203 0.000434 2axpA 173 0.000681 c.37.1.1 127497 2rhmA 193 0.000915 2bdtA 189 0.000977 c.37.1.25 128344 1qhxA 178 0.000986 c.37.1.3 31936 1e4yA 214 0.001013 c.37.1.1,g.41.2.1 31901,45181 2pezA 179 0.001105 2yvuA 186 0.001169 3be4A 217 0.001557 1knqA 175 0.001750 c.37.1.17 72786 1ak2A 233 0.002548 c.37.1.1,g.41.2.1 31894,45195 1akyA 220 0.002889 c.37.1.1,g.41.2.1 31896,45197 2rgxA 206 0.003011 2f6rA 281 0.003844 3tmkA 216 0.004103 c.37.1.1 31920 1y63A 184 0.004819 c.37.1.1 116494 1zin 217 0.004844 1vhtA 218 0.004853 c.37.1.1 100700 2ak3A 226 0.004902 c.37.1.1,g.41.2.1 31892,45193 1e6cA 173 0.007646 c.37.1.2 59296 2eu8A 216 0.007929 2pt5A 168 0.008333 1gvnB 287 0.008544 c.37.1.21 76354 1ltqA 301 0.01189 c.108.1.9,c.37.1.1 78208,78209 1zd8A 227 0.01189 1zinA 217 0.01253 c.37.1.1,g.41.2.1 31915,45178 1ly1A 181 0.01262 c.37.1.1 74334 1uj2A 252 0.01307 c.37.1.6 99452 1xrjA 261 0.01363 c.37.1.6 122256 1kdoA 227 0.01370 c.37.1.1 68478 1rz3A 201 0.01557 c.37.1.6 98132 1nn5A 215 0.01583 c.37.1.1 85892 3c8uA 208 0.01665 1viaA 175 0.01700 c.37.1.2 100754 1rkbA 173 0.01782 c.37.1.1 111854 2iyvA 184 0.02006 c.37.1.2 137812 1ckeA 227 0.02730 c.37.1.1 31846 1m7gA 211 0.02764 c.37.1.4 78724 2g1kA 176 0.02773 c.37.1.2 134519 2ax4A 198 0.03091 2qgnA 322 0.03729 3crrA 323 0.04397 2grjA 192 0.06280 1zuhA 168 0.06363 1jjvA 206 0.08200 c.37.1.1 71698 2gzaA 361 0.1080 2p5tB 253 0.1268 1a7jA 290 0.1285 c.37.1.6 31952 1kagA 173 0.2297 c.37.1.2 72249 2f1rA 171 0.2786 1np6A 174 0.2809 c.37.1.10 85954 1l2tA 235 0.2956 c.37.1.12 73514 1xx6A 191 0.3276 c.37.1.24,g.39.1.14 116139,116140 1in4A 334 0.3659 a.4.5.11,c.37.1.20 62597,62598 1xjcA 169 0.4166 c.37.1.10 115387 2orwA 184 0.5408 2qm8A 337 0.5539 2oap1 511 0.6323 1in6A 334 0.6354 a.4.5.11,c.37.1.20 62601,62602 1sq5A 308 0.6467 c.37.1.6 105882 2p67A 341 0.6560 2pzeA 229 0.6571 1g6oA 330 0.7695 c.37.1.11 32430 3b9qA 302 0.8209 2cbzA 237 0.8358 2qy9A 309 0.8530 2eyuA 261 0.8646 2bbsA 290 0.9026 2nq2C 253 0.9093 2ff7A 247 0.9521 c.37.1.12 133377 2ixeA 271 0.9773 1bif 469 0.9801 2pmkA 243 0.997 1x6vA 630 1.028 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1a7j 290 1.057 2pt7A 330 1.070 1rj9A 304 1.163 a.24.13.1,c.37.1.10 97553,97554 1lv7A 257 1.275 c.37.1.20 78232 2ihyA 279 1.461 2hf9A 226 1.479 1zu4A 320 1.514 1xewX 182 1.609 c.37.1.12 115235 1bifA 469 1.638 c.37.1.7,c.60.1.4 31961,34003 1tq4A 413 1.750 c.37.1.8 107201 1vplA 256 1.945 c.37.1.12 113966 1ji0A 240 1.946 c.37.1.12 71665 1sgwA 214 1.995 c.37.1.12 105541 1b0uA 262 2.044 c.37.1.12 32370 2bjvA 265 2.053 1z47A 355 2.097 2pcjA 224 2.174 2ze7A 253 2.363 2og2A 359 2.453 1n2zA 245 2.469 c.92.2.2 79865 2it1A 362 2.505 2d2eA 250 2.704 1htwA 158 2.736 c.37.1.18 71083 2gxaA 274 2.824 1n4aA 252 2.883 c.92.2.2 85317 1d2nA 272 2.946 c.37.1.20 32428 1gl6A 436 3.093 c.37.1.11 70259 1t9hA 307 3.193 b.40.4.5,c.37.1.8 112358,112359 2a5yB 549 3.299 1g291 372 3.311 1w44A 331 3.599 c.37.1.11 114147 1oxxK 353 3.721 b.40.6.3,c.37.1.12 93715,93716 1odfA 290 3.791 c.37.1.6 92782 1g6hA 257 3.835 c.37.1.12 60318 1sxjA 511 4.054 a.80.1.1,c.37.1.20 106081,106082 1dekA 241 4.062 c.37.1.1 31842 1tueA 212 4.093 c.37.1.20 107323 1e9rA 437 4.260 c.37.1.11 64827 1njgA 250 4.477 c.37.1.20 85785 1ky3A 182 4.716 c.37.1.8 73193 2vhjA 331 4.834 1ye8A 178 4.948 c.37.1.11 123010 2c9oA 456 5.406 2qgzA 308 5.464 1ls1A 295 5.514 a.24.13.1,c.37.1.10 78170,78171 2fnaA 357 5.856 a.4.5.11,c.37.1.20 133809,133810 1g8pA 350 5.879 c.37.1.20 60376 2bkhA 814 5.887 1h65A 270 6.028 c.37.1.8 65640 1pujA 282 6.140 c.37.1.8 88294 2j69A 695 6.251 1knxA 312 6.562 c.98.2.1,c.91.1.2 77459,77460 2ga8A 359 6.593 1sxjE 354 6.609 a.80.1.1,c.37.1.20 106089,106090 2r2aA 199 6.863 3c5cA 187 7.059 2qi9C 249 7.217 1nijA 318 7.310 c.37.1.10,d.237.1.1 85741,85742 1w5tA 412 8.083 a.4.5.11,c.37.1.20 114255,114256 2r44A 331 8.298 1tca 317 8.400 2pjzA 263 9.333 1w4rA 195 9.97 2v26A 784 10.25 2hxsA 178 10.53 2akaB 299 11.22 c.37.1.8 126914 1z08A 170 11.49 c.37.1.8 124303 1w7jA 795 11.80 b.34.3.1,c.37.1.9 120688,120689 1vmaA 306 11.98 a.24.13.1,c.37.1.10 108887,108888 1ko7A 314 12.09 c.98.2.1,c.91.1.2 72797,72798 1w9iA 770 12.18 2q3hA 201 12.69 2chuA 296 12.89 c.92.2.4 130485 1efdN 266 13.41 c.92.2.1 35597 1fnnA 389 13.69 a.4.5.11,c.37.1.20 16129,32426 2zejA 184 14.47 1sxjC 340 14.80 a.80.1.1,c.37.1.20 106085,106086 2o5vA 359 16.03 1u94A 356 17.04 c.37.1.11,d.48.1.1 107743,107744 2g6bA 180 17.07 c.37.1.8 134701 1a5tA 334 17.88 a.80.1.1,c.37.1.20 18450,32423 3bs4A 260 17.93 3bwdD 182 18.19 1f6bA 198 18.20 c.37.1.8 64986 1mh1A 186 18.39 c.37.1.8 32002 2q8pA 260 18.75 2bonA 332 18.83 2iutA 574 19.32 1m7bA 184 19.38 c.37.1.8 74572 1u0jA 267 19.47 c.37.1.20 107546 1vf8A 377 19.75 c.1.8.5,d.26.3.1 120029,120030 2gcoA 201 20.21 2hjgA 436 21.22 2ozeA 298 21.53 1j8mF 297 22.25 a.24.13.1,c.37.1.10 62742,62743 2b8tA 223 22.30 c.37.1.24,g.39.1.14 128109,128110 2rexB 197 22.33 1ihuA 589 23.05 c.37.1.10,c.37.1.10 62394,62395 2hu5A 582 23.33 b.69.7.2,c.69.1.33 136763,136764 1ionA 243 23.76 c.37.1.10 62633 1nofA 383 24.10 b.71.1.2,c.1.8.3 92020,92021 1yqtA 538 25.32 2qjwA 176 26.53 2b8wA 328 27.78 3c4vA 426 27.84 2p5sA 199 27.90 2bekA 257 27.97 2chgA 226 28.64 1f2tA 149 29.37 c.37.1.12 32373 2yv5A 302 30.21 1nlfA 279 32.45 c.37.1.11 85850 2ip2A 334 32.98 2gjsA 176 33.99 c.37.1.8 135287 1svmA 377 34.07 c.37.1.20 112126 1xp8A 366 34.74 c.37.1.11,d.48.1.1 115735,115736 2cukA 311 35.36 2o2gA 223 36.71 3b9pA 297 36.97 3bfkA 181 38.18 2fdxA 138 38.96 c.23.5.1 31192 1z06A 189 39.34 c.37.1.8 124301 1wcv1 257 39.64 1zj6A 187 40.20 c.37.1.8 125145 2bm8A 236 41.42 c.66.1.50 128771 1g3qA 237 41.53 c.37.1.10 60237 1g41A 444 41.61 c.37.1.20 32450 1a5t 334 41.83 3bosA 242 42.53 1cr1A 296 44.16 c.37.1.11 32286 1g55A 343 44.19 c.66.1.26 34247 2r7aA 256 44.74 2etvA 346 45.66 c.92.2.4 132372 2j8mA 172 46.08 2dkhA 639 46.54 1cp2A 269 47.07 c.37.1.10 32269 2rebA 352 50.37 c.37.1.11,d.48.1.1 32282,38767 1jmkC 230 50.76 c.69.1.22 71747 2b7aA 293 51.38 2r6fA 972 51.41 1uufA 369 51.63 b.35.1.2,c.2.1.1 100006,100007 1gdhA 320 51.71 c.2.1.4,c.23.12.1 30095,31355 1e8cA 498 52.38 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1jbkA 195 52.77 c.37.1.20 71631 2dpxA 174 52.89 3co5A 143 54.62 2pi6A 361 55.47 1vcoA 550 55.47 c.23.16.1,c.37.1.10 108508,108509 3cegA 323 56.61 2oblA 347 57.18 2h17A 181 57.75 2am1A 454 58.24 1b6g 310 59.10 3b6uA 372 60.02 2c8vA 288 62.20 c.37.1.10 130128 1xtpA 254 62.52 c.66.1.42 116031 2dpyA 438 63.73 1r2qA 170 64.25 c.37.1.8 96874 2ebn 289 65.35 1l1eA 287 65.40 c.66.1.18 73454 1kidA 203 65.51 c.8.5.1 30771 1ju2A 536 66.03 c.3.1.2,d.16.1.1 77169,77170 2hcyA 347 66.33 2a5dA 175 66.97 c.37.1.8 126172 1kngA 156 67.52 c.47.1.10 72777 2zadA 345 70.97 1sznA 417 72.08 b.71.1.1,c.1.8.1 106162,106163 2p74A 263 72.61 1r8sA 164 73.27 c.37.1.8 97247 1xd8A 289 74.01 2r3sA 335 75.03 2cf5A 357 75.06 1wmsA 177 76.21 c.37.1.8 109414 2bmeA 186 81.92 c.37.1.8 128790 1jcfA 344 83.43 c.55.1.1,c.55.1.1 62878,62879 1ek0A 170 84.60 c.37.1.8 32076 2fz4A 237 84.93 c.37.1.19 134419 2jbwA 386 85.23 1zczA 464 85.33 c.24.1.3,c.97.1.4 124923,124924 2ew1A 201 85.41 c.37.1.8 132446 2qmoA 220 85.42 1bu8A 452 87.12 b.12.1.2,c.69.1.19 23647,34795 1w78A 422 87.23 2cvhA 220 88.24 1z2aA 168 89.82 c.37.1.8 124374 1uirA 314 89.96 c.66.1.17 99429