# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1kjwA 295 6.43e-08 b.34.2.1,c.37.1.1 68643,68644 1gky 187 7.52e-08 2pbrA 195 9.20e-08 2j41A 207 1.65e-07 2qorA 204 2.17e-07 1kgdA 180 2.34e-07 c.37.1.1 68582 1ex7A 186 2.48e-07 c.37.1.1 59537 1znwA 207 4.18e-07 c.37.1.1 125412 4tmkA 213 1.99e-06 c.37.1.1 31930 1p5zB 263 2.72e-06 c.37.1.1 87815 1p6xA 334 3.19e-06 c.37.1.1 94195 2ccjA 205 4.78e-06 2z0hA 197 5.75e-06 1gtvA 214 1.05e-05 c.37.1.1 70537 1ki9A 192 1.42e-05 c.37.1.1 84404 2an9A 207 1.94e-05 c.37.1.1 127037 2vp4A 230 2.42e-05 2c95A 196 2.43e-05 1of1A 376 2.80e-05 c.37.1.1 103924 1khtA 192 4.79e-05 c.37.1.1 84401 1e2kA 331 5.01e-05 c.37.1.1 31854 1s96A 219 5.62e-05 c.37.1.1 98740 1ukzA 203 6.40e-05 c.37.1.1 31840 1qf9A 194 6.57e-05 c.37.1.1 31848 1t0hB 224 7.04e-05 c.37.1.1 106208 2bwjA 199 7.16e-05 2qt1A 207 9.71e-05 2cdnA 201 0.000198 c.37.1.1 130289 2plrA 213 0.000254 1ukz 203 0.000277 1zm7A 230 0.000292 1qhxA 178 0.000394 c.37.1.3 31936 2yvuA 186 0.000496 2axpA 173 0.000617 c.37.1.1 127497 2rhmA 193 0.000789 2bdtA 189 0.000887 c.37.1.25 128344 1e4yA 214 0.000913 c.37.1.1,g.41.2.1 31901,45181 2pezA 179 0.000937 1knqA 175 0.001196 c.37.1.17 72786 3be4A 217 0.001404 1akyA 220 0.001936 c.37.1.1,g.41.2.1 31896,45197 2rgxA 206 0.002127 1ak2A 233 0.002131 c.37.1.1,g.41.2.1 31894,45195 1y63A 184 0.002682 c.37.1.1 116494 2f6rA 281 0.002931 2ak3A 226 0.003117 c.37.1.1,g.41.2.1 31892,45193 1zin 217 0.003805 1vhtA 218 0.004001 c.37.1.1 100700 2pt5A 168 0.005373 3tmkA 216 0.005524 c.37.1.1 31920 1gvnB 287 0.005696 c.37.1.21 76354 2eu8A 216 0.005899 1ltqA 301 0.009250 c.108.1.9,c.37.1.1 78208,78209 1zd8A 227 0.009623 1zinA 217 0.01012 c.37.1.1,g.41.2.1 31915,45178 1e6cA 173 0.01024 c.37.1.2 59296 1kdoA 227 0.01122 c.37.1.1 68478 1ly1A 181 0.01177 c.37.1.1 74334 1nn5A 215 0.01188 c.37.1.1 85892 1rz3A 201 0.01191 c.37.1.6 98132 2iyvA 184 0.01265 c.37.1.2 137812 1viaA 175 0.01272 c.37.1.2 100754 3c8uA 208 0.01308 1uj2A 252 0.01546 c.37.1.6 99452 1xrjA 261 0.01635 c.37.1.6 122256 1m7gA 211 0.01737 c.37.1.4 78724 1ckeA 227 0.02014 c.37.1.1 31846 2qgnA 322 0.02103 1rkbA 173 0.02147 c.37.1.1 111854 2ax4A 198 0.02466 2g1kA 176 0.02529 c.37.1.2 134519 3crrA 323 0.03150 1zuhA 168 0.04785 2grjA 192 0.05130 2p5tB 253 0.06695 1jjvA 206 0.1035 c.37.1.1 71698 1a7jA 290 0.1098 c.37.1.6 31952 2gzaA 361 0.1411 1np6A 174 0.2131 c.37.1.10 85954 1kagA 173 0.2338 c.37.1.2 72249 1l2tA 235 0.2364 c.37.1.12 73514 2f1rA 171 0.2499 1xx6A 191 0.2671 c.37.1.24,g.39.1.14 116139,116140 1xjcA 169 0.3406 c.37.1.10 115387 1sq5A 308 0.3947 c.37.1.6 105882 1in4A 334 0.4006 a.4.5.11,c.37.1.20 62597,62598 2orwA 184 0.4036 1g6oA 330 0.4261 c.37.1.11 32430 2pt7A 330 0.4838 2pzeA 229 0.4943 2oap1 511 0.5555 1in6A 334 0.5900 a.4.5.11,c.37.1.20 62601,62602 2cbzA 237 0.6015 2qm8A 337 0.6031 2bbsA 290 0.6817 2eyuA 261 0.7383 2qy9A 309 0.7478 3b9qA 302 0.7922 1a7j 290 0.7964 2ff7A 247 0.8011 c.37.1.12 133377 1bif 469 0.8049 2p67A 341 0.8079 2pmkA 243 0.8142 2ixeA 271 0.8680 2hf9A 226 0.9373 1zu4A 320 0.9896 1rj9A 304 1.138 a.24.13.1,c.37.1.10 97553,97554 2nq2C 253 1.143 1z47A 355 1.188 1x6vA 630 1.191 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1lv7A 257 1.193 c.37.1.20 78232 2ihyA 279 1.305 1xewX 182 1.344 c.37.1.12 115235 2pcjA 224 1.398 2it1A 362 1.472 1htwA 158 1.554 c.37.1.18 71083 1vplA 256 1.581 c.37.1.12 113966 1sgwA 214 1.607 c.37.1.12 105541 1bifA 469 1.627 c.37.1.7,c.60.1.4 31961,34003 1n2zA 245 1.716 c.92.2.2 79865 2og2A 359 1.770 2ze7A 253 1.785 1tq4A 413 1.802 c.37.1.8 107201 1g291 372 1.952 1b0uA 262 1.958 c.37.1.12 32370 1d2nA 272 2.000 c.37.1.20 32428 1oxxK 353 2.013 b.40.6.3,c.37.1.12 93715,93716 2bjvA 265 2.164 2gxaA 274 2.223 1ji0A 240 2.251 c.37.1.12 71665 1n4aA 252 2.327 c.92.2.2 85317 2d2eA 250 2.526 1njgA 250 2.720 c.37.1.20 85785 1gl6A 436 2.995 c.37.1.11 70259 1odfA 290 3.085 c.37.1.6 92782 2qgzA 308 3.434 1dekA 241 3.435 c.37.1.1 31842 1g6hA 257 3.443 c.37.1.12 60318 2a5yB 549 3.664 2vhjA 331 3.713 1w44A 331 3.769 c.37.1.11 114147 2ga8A 359 3.902 1t9hA 307 4.546 b.40.4.5,c.37.1.8 112358,112359 1ky3A 182 4.673 c.37.1.8 73193 1ye8A 178 4.690 c.37.1.11 123010 2bkhA 814 4.701 1sxjA 511 4.811 a.80.1.1,c.37.1.20 106081,106082 2c9oA 456 5.017 2r44A 331 5.088 2r2aA 199 5.211 1nijA 318 5.520 c.37.1.10,d.237.1.1 85741,85742 1w4rA 195 5.534 2j69A 695 5.688 1h65A 270 5.898 c.37.1.8 65640 1tueA 212 5.961 c.37.1.20 107323 1efdN 266 6.073 c.92.2.1 35597 2qi9C 249 6.189 1pujA 282 6.236 c.37.1.8 88294 1g8pA 350 6.340 c.37.1.20 60376 1ls1A 295 6.381 a.24.13.1,c.37.1.10 78170,78171 1e9rA 437 6.423 c.37.1.11 64827 2v26A 784 6.494 2pjzA 263 6.830 1knxA 312 6.916 c.98.2.1,c.91.1.2 77459,77460 1sxjE 354 6.944 a.80.1.1,c.37.1.20 106089,106090 2fnaA 357 7.062 a.4.5.11,c.37.1.20 133809,133810 1u94A 356 7.481 c.37.1.11,d.48.1.1 107743,107744 1tca 317 7.540 1w9iA 770 7.932 1w7jA 795 8.277 b.34.3.1,c.37.1.9 120688,120689 3c5cA 187 8.453 1w5tA 412 8.538 a.4.5.11,c.37.1.20 114255,114256 1ko7A 314 8.951 c.98.2.1,c.91.1.2 72797,72798 2o5vA 359 8.998 2q3hA 201 9.816 2hxsA 178 10.85 1vmaA 306 10.85 a.24.13.1,c.37.1.10 108887,108888 2hjgA 436 11.05 2bonA 332 11.13 2q8pA 260 11.21 1sxjC 340 11.61 a.80.1.1,c.37.1.20 106085,106086 1f6bA 198 11.82 c.37.1.8 64986 1nlfA 279 11.92 c.37.1.11 85850 2akaB 299 13.12 c.37.1.8 126914 2zejA 184 13.24 2b8tA 223 13.28 c.37.1.24,g.39.1.14 128109,128110 1yqtA 538 13.78 1fnnA 389 14.38 a.4.5.11,c.37.1.20 16129,32426 1cr1A 296 15.04 c.37.1.11 32286 2o2gA 223 16.01 1a5tA 334 16.06 a.80.1.1,c.37.1.20 18450,32423 1z08A 170 16.26 c.37.1.8 124303 1mh1A 186 16.51 c.37.1.8 32002 3bs4A 260 16.70 1u0jA 267 16.99 c.37.1.20 107546 1vf8A 377 17.42 c.1.8.5,d.26.3.1 120029,120030 3bwdD 182 17.52 2iutA 574 17.66 2gcoA 201 18.42 2rebA 352 18.80 c.37.1.11,d.48.1.1 32282,38767 2dkhA 639 19.37 1j8mF 297 20.53 a.24.13.1,c.37.1.10 62742,62743 2rexB 197 21.35 2qjwA 176 21.49 2chuA 296 21.75 c.92.2.4 130485 2r7aA 256 22.24 2hu5A 582 22.40 b.69.7.2,c.69.1.33 136763,136764 2g6bA 180 26.18 c.37.1.8 134701 1ihuA 589 26.27 c.37.1.10,c.37.1.10 62394,62395 1svmA 377 26.44 c.37.1.20 112126 1ionA 243 26.46 c.37.1.10 62633 1m7bA 184 26.55 c.37.1.8 74572 2chgA 226 27.78 1xp8A 366 28.92 c.37.1.11,d.48.1.1 115735,115736 1nofA 383 29.15 b.71.1.2,c.1.8.3 92020,92021 2cvhA 220 29.25 1g55A 343 29.69 c.66.1.26 34247 2gjsA 176 30.26 c.37.1.8 135287 2yv5A 302 33.16 1zj6A 187 33.29 c.37.1.8 125145 2fdxA 138 33.52 c.23.5.1 31192 1cp2A 269 33.65 c.37.1.10 32269 1f2tA 149 34.07 c.37.1.12 32373 2p5sA 199 34.15 1g3qA 237 34.35 c.37.1.10 60237 1a5t 334 34.67 2r79A 283 34.90 2ozeA 298 35.10 3bfkA 181 35.32 2bekA 257 35.97 1jbkA 195 37.64 c.37.1.20 71631 2j8mA 172 38.05 1m1zA 513 38.11 c.26.2.1,d.153.1.1 78457,78458 3bosA 242 38.63 1vcoA 550 41.33 c.23.16.1,c.37.1.10 108508,108509 2b7aA 293 41.43 2dpyA 438 41.75 3c4vA 426 42.11 2cukA 311 42.12 2c8vA 288 43.11 c.37.1.10 130128 2etvA 346 43.86 c.92.2.4 132372 1e8cA 498 43.86 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1tuoA 464 45.18 2uz0A 263 46.41 1xd8A 289 46.86 2h17A 181 48.11 2oblA 347 48.12 1ufoA 238 48.15 c.69.1.27 99344 2b8wA 328 48.23 2zadA 345 48.76 2qmoA 220 50.11 1g41A 444 51.63 c.37.1.20 32450 1bu8A 452 52.06 b.12.1.2,c.69.1.19 23647,34795 1b6g 310 53.47 1z06A 189 54.56 c.37.1.8 124301 2a5dA 175 56.37 c.37.1.8 126172 1n0wA 243 57.19 c.37.1.11 79772 1jmkC 230 57.64 c.69.1.22 71747 2i1qA 322 57.87 a.60.4.1,c.37.1.11 136984,136985 1wcv1 257 58.26 2r3sA 335 58.62 1kidA 203 59.84 c.8.5.1 30771 2am1A 454 60.00 3co5A 143 61.27 2r6fA 972 61.54 1uufA 369 61.86 b.35.1.2,c.2.1.1 100006,100007 1l7aA 318 64.95 c.69.1.25 77772 1xtpA 254 65.12 c.66.1.42 116031 2jhfA 374 65.20 b.35.1.2,c.2.1.1 138314,138315 1im8A 244 67.63 c.66.1.14 66212 3b9pA 297 67.66 2dpxA 174 67.77 2ip2A 334 69.49 1sznA 417 69.56 b.71.1.1,c.1.8.1 106162,106163 1jcfA 344 69.71 c.55.1.1,c.55.1.1 62878,62879 1x3sA 195 70.33 c.37.1.8 121670 2jcbA 200 70.36 1gdhA 320 71.98 c.2.1.4,c.23.12.1 30095,31355 1i2mA 216 74.41 c.37.1.8 61568 1r8sA 164 76.03 c.37.1.8 97247 2q3fA 181 76.48 1wmsA 177 76.89 c.37.1.8 109414 2aebA 322 77.85 c.42.1.1 126617 2cf5A 357 77.91 1r2qA 170 78.77 c.37.1.8 96874 1o5zA 442 80.19 c.59.1.2,c.72.2.2 92530,92531 1nuiA 255 81.58 e.13.1.2,g.41.3.2 86194,86195 2hcyA 347 82.24 2afhE 289 83.30 c.37.1.10 126683 2hehA 387 84.62 1kngA 156 84.72 c.47.1.10 72777 5nulA 138 84.92 c.23.5.1 31191 2ew1A 201 84.94 c.37.1.8 132446 1oi7A 288 86.48 c.2.1.8,c.23.4.1 87049,87050 1zczA 464 86.70 c.24.1.3,c.97.1.4 124923,124924 1l1eA 287 87.11 c.66.1.18 73454 1n8kA 374 87.78 b.35.1.2,c.2.1.1 80298,80299 1hplA 449 88.70 b.12.1.2,c.69.1.19 23639,34787 2bm8A 236 89.07 c.66.1.50 128771 1zd9A 188 89.35 c.37.1.8 124938