# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1kjwA 295 2.32e-05 b.34.2.1,c.37.1.1 68643,68644 2pbrA 195 3.73e-05 2qorA 204 6.41e-05 1gky 187 7.82e-05 1kgdA 180 0.000138 c.37.1.1 68582 2j41A 207 0.000142 1ex7A 186 0.000161 c.37.1.1 59537 1znwA 207 0.000228 c.37.1.1 125412 2ccjA 205 0.000373 1p5zB 263 0.000484 c.37.1.1 87815 1p6xA 334 0.000492 c.37.1.1 94195 1gtvA 214 0.000883 c.37.1.1 70537 2c95A 196 0.001562 4tmkA 213 0.001678 c.37.1.1 31930 1ki9A 192 0.001962 c.37.1.1 84404 2z0hA 197 0.002160 1ukzA 203 0.002321 c.37.1.1 31840 2bwjA 199 0.002522 2vp4A 230 0.002973 1t0hB 224 0.003666 c.37.1.1 106208 1of1A 376 0.003702 c.37.1.1 103924 1qf9A 194 0.003806 c.37.1.1 31848 2an9A 207 0.004547 c.37.1.1 127037 1ukz 203 0.004761 2plrA 213 0.004920 2yvuA 186 0.006323 2qt1A 207 0.008062 2axpA 173 0.009213 c.37.1.1 127497 1khtA 192 0.009353 c.37.1.1 84401 2cdnA 201 0.009681 c.37.1.1 130289 1qhxA 178 0.01094 c.37.1.3 31936 2pezA 179 0.01129 2rhmA 193 0.01386 1s96A 219 0.01544 c.37.1.1 98740 2f6rA 281 0.02044 1knqA 175 0.02112 c.37.1.17 72786 1zm7A 230 0.02459 1akyA 220 0.02586 c.37.1.1,g.41.2.1 31896,45197 2bdtA 189 0.02941 c.37.1.25 128344 2pt5A 168 0.03192 1e2kA 331 0.03847 c.37.1.1 31854 3tmkA 216 0.03908 c.37.1.1 31920 1y63A 184 0.03923 c.37.1.1 116494 2rgxA 206 0.04245 3be4A 217 0.04783 1m7gA 211 0.05332 c.37.1.4 78724 1e4yA 214 0.06334 c.37.1.1,g.41.2.1 31901,45181 1zin 217 0.07873 1ak2A 233 0.08079 c.37.1.1,g.41.2.1 31894,45195 1viaA 175 0.1134 c.37.1.2 100754 1gvnB 287 0.1149 c.37.1.21 76354 2iyvA 184 0.1164 c.37.1.2 137812 1vhtA 218 0.1167 c.37.1.1 100700 1rz3A 201 0.1429 c.37.1.6 98132 3c8uA 208 0.1456 1zinA 217 0.1469 c.37.1.1,g.41.2.1 31915,45178 2g1kA 176 0.1470 c.37.1.2 134519 2ax4A 198 0.1542 1e6cA 173 0.1633 c.37.1.2 59296 2p5tB 253 0.1769 1uj2A 252 0.1835 c.37.1.6 99452 1xrjA 261 0.2049 c.37.1.6 122256 2eu8A 216 0.2075 1kdoA 227 0.2337 c.37.1.1 68478 1nn5A 215 0.2746 c.37.1.1 85892 1rkbA 173 0.2749 c.37.1.1 111854 3crrA 323 0.2976 2ak3A 226 0.3158 c.37.1.1,g.41.2.1 31892,45193 1zuhA 168 0.6134 1zd8A 227 0.6353 1ckeA 227 0.7994 c.37.1.1 31846 1ly1A 181 0.8157 c.37.1.1 74334 2grjA 192 0.9578 1ltqA 301 1.583 c.108.1.9,c.37.1.1 78208,78209 2qgnA 322 1.753 1jjvA 206 1.819 c.37.1.1 71698 1a7jA 290 2.147 c.37.1.6 31952 1xx6A 191 2.188 c.37.1.24,g.39.1.14 116139,116140 1tq4A 413 2.258 c.37.1.8 107201 1kagA 173 2.548 c.37.1.2 72249 2qy9A 309 2.972 2bbsA 290 2.995 1in6A 334 3.658 a.4.5.11,c.37.1.20 62601,62602 1bif 469 4.126 1bifA 469 5.003 c.37.1.7,c.60.1.4 31961,34003 3b9qA 302 5.121 1rj9A 304 5.127 a.24.13.1,c.37.1.10 97553,97554 1a7j 290 5.341 2orwA 184 5.458 1sq5A 308 5.501 c.37.1.6 105882 1g6oA 330 5.531 c.37.1.11 32430 2cbzA 237 5.754 1in4A 334 5.820 a.4.5.11,c.37.1.20 62597,62598 2ff7A 247 6.389 c.37.1.12 133377 2eyuA 261 6.525 1zu4A 320 6.579 1t9hA 307 7.597 b.40.4.5,c.37.1.8 112358,112359 2ixeA 271 7.906 2pzeA 229 8.127 2pmkA 243 8.923 2og2A 359 9.297 1b0uA 262 9.390 c.37.1.12 32370 2pt7A 330 9.483 1z47A 355 9.531 1d2nA 272 9.924 c.37.1.20 32428 1vplA 256 10.15 c.37.1.12 113966 2bm8A 236 10.16 c.66.1.50 128771 2it1A 362 10.94 2gzaA 361 11.53 1g6hA 257 11.56 c.37.1.12 60318 1ji0A 240 12.19 c.37.1.12 71665 2hf9A 226 12.84 1vmaA 306 13.64 a.24.13.1,c.37.1.10 108887,108888 1odfA 290 13.79 c.37.1.6 92782 1l2tA 235 14.14 c.37.1.12 73514 2ihyA 279 14.17 2ze7A 253 14.51 1lv7A 257 15.48 c.37.1.20 78232 1yqtA 538 16.06 1htwA 158 16.15 c.37.1.18 71083 1l1eA 287 16.36 c.66.1.18 73454 1oxxK 353 16.92 b.40.6.3,c.37.1.12 93715,93716 2bjvA 265 18.67 2qm8A 337 19.37 2fnaA 357 19.61 a.4.5.11,c.37.1.20 133809,133810 2pjzA 263 20.02 1jmkC 230 20.44 c.69.1.22 71747 1x6vA 630 21.28 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2pcjA 224 22.50 2d2eA 250 23.02 1sgwA 214 24.62 c.37.1.12 105541 2qjwA 176 25.45 1g291 372 25.60 2hxsA 178 25.76 1w4rA 195 26.57 2o2gA 223 26.84 2cvhA 220 28.22 2qgzA 308 28.28 2nq2C 253 28.75 2qi9C 249 30.21 2akaB 299 30.24 c.37.1.8 126914 1ihuA 589 32.10 c.37.1.10,c.37.1.10 62394,62395 1ls1A 295 32.64 a.24.13.1,c.37.1.10 78170,78171 1sxjA 511 33.93 a.80.1.1,c.37.1.20 106081,106082 1ky3A 182 34.23 c.37.1.8 73193 1a5tA 334 38.52 a.80.1.1,c.37.1.20 18450,32423 2rexB 197 38.89 1nijA 318 39.44 c.37.1.10,d.237.1.1 85741,85742 2i2wA 212 39.99 1h65A 270 40.59 c.37.1.8 65640 1fnnA 389 40.73 a.4.5.11,c.37.1.20 16129,32426 2ip2A 334 41.23 2vhjA 331 42.94 2cb9A 244 45.35 1gl6A 436 45.84 c.37.1.11 70259 1sxjE 354 45.86 a.80.1.1,c.37.1.20 106089,106090 2hjgA 436 46.14 2a5yB 549 47.33 2b8wA 328 47.48 1dekA 241 47.57 c.37.1.1 31842 2i1qA 322 48.21 a.60.4.1,c.37.1.11 136984,136985 1a5t 334 49.18 2ew1A 201 49.53 c.37.1.8 132446 1tca 317 51.12 2yv5A 302 51.35 1tk9A 188 52.10 c.80.1.3 107082 1ye8A 178 52.15 c.37.1.11 123010 1e9rA 437 52.19 c.37.1.11 64827 2g6bA 180 52.57 c.37.1.8 134701 2px0A 296 53.40 1mh1A 186 53.68 c.37.1.8 32002 1uxoA 192 54.65 c.69.1.31 108121 1b6gA 310 56.83 c.69.1.8 34661 2q3hA 201 57.14 2c9oA 456 57.15 1w44A 331 57.29 c.37.1.11 114147 3c5cA 187 57.97 1nlfA 279 59.23 c.37.1.11 85850 1vg8A 207 59.27 c.37.1.8 108606 1z08A 170 64.82 c.37.1.8 124303 2qu8A 228 64.87 2qmoA 220 65.89 1tcaA 317 66.90 c.69.1.17 34726 1h1nA 305 67.43 c.1.8.3 70855 1tuoA 464 67.69 1njgA 250 68.27 c.37.1.20 85785 1knxA 312 70.27 c.98.2.1,c.91.1.2 77459,77460 2p67A 341 70.47 1ufoA 238 71.69 c.69.1.27 99344 1u94A 356 71.73 c.37.1.11,d.48.1.1 107743,107744 1lw7A 365 71.87 c.26.1.3,c.37.1.1 74295,74296 2rebA 352 73.14 c.37.1.11,d.48.1.1 32282,38767 1cr1A 296 77.45 c.37.1.11 32286 1r3dA 264 78.05 c.69.1.35 111680 1np6A 174 78.16 c.37.1.10 85954 2gxaA 274 78.33 1b6g 310 78.95 3c2qA 345 79.04 1wmsA 177 79.13 c.37.1.8 109414 3bh0A 315 80.35 1j8mF 297 81.07 a.24.13.1,c.37.1.10 62742,62743 2gf9A 189 81.77 1svmA 377 83.01 c.37.1.20 112126 1hplA 449 83.79 b.12.1.2,c.69.1.19 23639,34787 2fk8A 318 84.07 c.66.1.18 133648 2oap1 511 85.34 1m7bA 184 85.89 c.37.1.8 74572 2ga8A 359 86.26 1fj2A 232 86.74 c.69.1.14 34720 1vptA 348 88.04 c.66.1.25 34207 1zcaA 359 88.56 a.66.1.1,c.37.1.8 124897,124898 2yvaA 196 89.23 2gcoA 201 89.53