# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1kjwA 295 4.13e-05 b.34.2.1,c.37.1.1 68643,68644 2pbrA 195 5.44e-05 2qorA 204 6.08e-05 1gky 187 7.29e-05 2j41A 207 0.000114 1znwA 207 0.000153 c.37.1.1 125412 1kgdA 180 0.000165 c.37.1.1 68582 1ex7A 186 0.000183 c.37.1.1 59537 1p5zB 263 0.000587 c.37.1.1 87815 1p6xA 334 0.000590 c.37.1.1 94195 2ccjA 205 0.000876 1gtvA 214 0.001071 c.37.1.1 70537 2z0hA 197 0.001487 2vp4A 230 0.002003 1qf9A 194 0.003702 c.37.1.1 31848 4tmkA 213 0.003732 c.37.1.1 31930 2c95A 196 0.003848 2an9A 207 0.004140 c.37.1.1 127037 1ukzA 203 0.004450 c.37.1.1 31840 1of1A 376 0.005372 c.37.1.1 103924 1ki9A 192 0.007445 c.37.1.1 84404 2cdnA 201 0.008076 c.37.1.1 130289 1ukz 203 0.009882 1t0hB 224 0.01140 c.37.1.1 106208 1zm7A 230 0.01154 2qt1A 207 0.01318 2bwjA 199 0.01321 1s96A 219 0.01335 c.37.1.1 98740 1e2kA 331 0.01599 c.37.1.1 31854 1khtA 192 0.01679 c.37.1.1 84401 2f6rA 281 0.02907 2plrA 213 0.02949 2yvuA 186 0.04142 2axpA 173 0.04209 c.37.1.1 127497 2pezA 179 0.05311 3be4A 217 0.05343 2rhmA 193 0.06948 1knqA 175 0.07031 c.37.1.17 72786 1qhxA 178 0.07691 c.37.1.3 31936 2bdtA 189 0.08454 c.37.1.25 128344 1m7gA 211 0.08546 c.37.1.4 78724 3tmkA 216 0.08933 c.37.1.1 31920 1viaA 175 0.09844 c.37.1.2 100754 2pt5A 168 0.1002 1y63A 184 0.1041 c.37.1.1 116494 2rgxA 206 0.1092 1gvnB 287 0.1108 c.37.1.21 76354 1e4yA 214 0.1111 c.37.1.1,g.41.2.1 31901,45181 1akyA 220 0.1113 c.37.1.1,g.41.2.1 31896,45197 3c8uA 208 0.1563 1zin 217 0.2036 1e6cA 173 0.2127 c.37.1.2 59296 3crrA 323 0.2531 1kdoA 227 0.2719 c.37.1.1 68478 2g1kA 176 0.3044 c.37.1.2 134519 2iyvA 184 0.3483 c.37.1.2 137812 1uj2A 252 0.3636 c.37.1.6 99452 1xrjA 261 0.3760 c.37.1.6 122256 2eu8A 216 0.4079 1zinA 217 0.4103 c.37.1.1,g.41.2.1 31915,45178 2ax4A 198 0.4403 2ak3A 226 0.4637 c.37.1.1,g.41.2.1 31892,45193 1ak2A 233 0.5145 c.37.1.1,g.41.2.1 31894,45195 1nn5A 215 0.5217 c.37.1.1 85892 1rz3A 201 0.5222 c.37.1.6 98132 1rkbA 173 0.5554 c.37.1.1 111854 1zuhA 168 0.6574 1ckeA 227 0.7545 c.37.1.1 31846 1vhtA 218 0.7633 c.37.1.1 100700 1ly1A 181 0.7995 c.37.1.1 74334 2grjA 192 0.8680 1zd8A 227 1.101 1ltqA 301 1.133 c.108.1.9,c.37.1.1 78208,78209 2qgnA 322 1.411 2p5tB 253 1.561 1xx6A 191 2.116 c.37.1.24,g.39.1.14 116139,116140 1sq5A 308 2.375 c.37.1.6 105882 1a7jA 290 2.469 c.37.1.6 31952 2gzaA 361 2.544 1kagA 173 2.792 c.37.1.2 72249 1tq4A 413 3.294 c.37.1.8 107201 2qy9A 309 3.803 3b9qA 302 4.535 1in6A 334 5.683 a.4.5.11,c.37.1.20 62601,62602 1jjvA 206 5.770 c.37.1.1 71698 2eyuA 261 5.996 1bifA 469 6.216 c.37.1.7,c.60.1.4 31961,34003 2orwA 184 6.657 1in4A 334 6.677 a.4.5.11,c.37.1.20 62597,62598 2qm8A 337 6.728 1zu4A 320 8.053 1bif 469 8.507 1rj9A 304 8.633 a.24.13.1,c.37.1.10 97553,97554 2bbsA 290 10.28 1a7j 290 10.48 2og2A 359 10.75 1lv7A 257 12.63 c.37.1.20 78232 1t9hA 307 13.10 b.40.4.5,c.37.1.8 112358,112359 1g6oA 330 13.53 c.37.1.11 32430 2pt7A 330 13.94 2b8wA 328 14.20 2ze7A 253 14.64 2a5yB 549 14.66 2p67A 341 14.77 1l1eA 287 16.95 c.66.1.18 73454 1vmaA 306 16.96 a.24.13.1,c.37.1.10 108887,108888 1w44A 331 17.98 c.37.1.11 114147 1np6A 174 18.32 c.37.1.10 85954 1dekA 241 18.79 c.37.1.1 31842 1tca 317 19.19 2cbzA 237 19.82 1x6vA 630 19.86 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2pzeA 229 20.34 2hxsA 178 21.14 1ls1A 295 22.15 a.24.13.1,c.37.1.10 78170,78171 1d2nA 272 23.71 c.37.1.20 32428 2bjvA 265 24.38 1nijA 318 24.73 c.37.1.10,d.237.1.1 85741,85742 2ip2A 334 25.02 2rexB 197 25.51 3c5cA 187 26.16 2ff7A 247 27.05 c.37.1.12 133377 1jmkC 230 27.08 c.69.1.22 71747 2pmkA 243 27.12 2f1rA 171 28.12 2bm8A 236 28.59 c.66.1.50 128771 1ky3A 182 31.32 c.37.1.8 73193 1sxjA 511 31.58 a.80.1.1,c.37.1.20 106081,106082 1l2tA 235 33.51 c.37.1.12 73514 1mh1A 186 33.63 c.37.1.8 32002 2oap1 511 35.12 2ixeA 271 35.80 1ji0A 240 35.81 c.37.1.12 71665 2o2gA 223 36.17 1sgwA 214 36.39 c.37.1.12 105541 1b0uA 262 36.72 c.37.1.12 32370 2qgzA 308 37.99 2a0mA 316 38.78 c.42.1.1 125960 1e9rA 437 38.94 c.37.1.11 64827 2q3hA 201 39.41 1odfA 290 39.57 c.37.1.6 92782 2cb9A 244 40.22 1z47A 355 42.02 2ihyA 279 42.28 1vplA 256 44.40 c.37.1.12 113966 1w4rA 195 45.01 2v26A 784 46.24 1g6hA 257 47.53 c.37.1.12 60318 2it1A 362 48.40 2akaB 299 48.41 c.37.1.8 126914 1fnnA 389 50.13 a.4.5.11,c.37.1.20 16129,32426 1xjcA 169 51.15 c.37.1.10 115387 2g6bA 180 51.98 c.37.1.8 134701 2qjwA 176 52.09 1tueA 212 52.88 c.37.1.20 107323 2gcoA 201 54.05 2gxaA 274 56.06 2dwcA 433 58.77 1a5tA 334 59.94 a.80.1.1,c.37.1.20 18450,32423 2jbwA 386 59.97 1z08A 170 60.27 c.37.1.8 124303 2hjgA 436 61.07 2pcjA 224 62.25 2dkhA 639 62.53 1tcaA 317 63.77 c.69.1.17 34726 1gq6A 313 64.58 c.42.1.1 70341 1gl6A 436 64.78 c.37.1.11 70259 2fnaA 357 65.83 a.4.5.11,c.37.1.20 133809,133810 2etvA 346 65.96 c.92.2.4 132372 1oxxK 353 66.69 b.40.6.3,c.37.1.12 93715,93716 1m1zA 513 69.39 c.26.2.1,d.153.1.1 78457,78458 1w7jA 795 69.77 b.34.3.1,c.37.1.9 120688,120689 2pjzA 263 70.97 2qi9C 249 71.21 1ufoA 238 71.70 c.69.1.27 99344 1ye8A 178 72.33 c.37.1.11 123010 1m7bA 184 72.72 c.37.1.8 74572 2pxxA 215 74.36 2ebn 289 74.84 2j69A 695 75.69 1uxoA 192 77.57 c.69.1.31 108121 2hf9A 226 77.87 2p5sA 199 78.74 1g291 372 79.22 1vg8A 207 80.01 c.37.1.8 108606 1njgA 250 82.04 c.37.1.20 85785 3bwdD 182 82.94 1g3qA 237 83.11 c.37.1.10 60237 1w9iA 770 83.92 2bkhA 814 86.74 2vhjA 331 86.76 2c9oA 456 89.24 1lw7A 365 89.85 c.26.1.3,c.37.1.1 74295,74296