# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1gky 187 0.3974 2an9A 207 0.6839 c.37.1.1 127037 2pbrA 195 0.7789 2qorA 204 0.9026 1ex7A 186 1.011 c.37.1.1 59537 1s96A 219 1.014 c.37.1.1 98740 2ccjA 205 1.032 4tmkA 213 1.272 c.37.1.1 31930 1p5zB 263 1.729 c.37.1.1 87815 2axpA 173 2.336 c.37.1.1 127497 1znwA 207 2.402 c.37.1.1 125412 2plrA 213 2.552 1ak2A 233 3.866 c.37.1.1,g.41.2.1 31894,45195 1qhxA 178 4.111 c.37.1.3 31936 2j41A 207 4.658 2pt5A 168 5.265 1qf9A 194 5.914 c.37.1.1 31848 2rgxA 206 6.484 1ukzA 203 6.666 c.37.1.1 31840 1kjwA 295 7.510 b.34.2.1,c.37.1.1 68643,68644 1uj2A 252 8.059 c.37.1.6 99452 2vp4A 230 8.312 1kgdA 180 8.562 c.37.1.1 68582 2yvuA 186 8.656 1y63A 184 9.540 c.37.1.1 116494 1kdoA 227 9.540 c.37.1.1 68478 1xrjA 261 9.720 c.37.1.6 122256 1ckeA 227 11.08 c.37.1.1 31846 2qt1A 207 11.12 2bdtA 189 11.33 c.37.1.25 128344 1akyA 220 12.94 c.37.1.1,g.41.2.1 31896,45197 2ax4A 198 13.91 1zm7A 230 14.13 3be4A 217 14.21 1khtA 192 15.10 c.37.1.1 84401 2pezA 179 15.83 1ki9A 192 16.00 c.37.1.1 84404 1gvnB 287 16.30 c.37.1.21 76354 2bwjA 199 17.63 1t0hB 224 18.16 c.37.1.1 106208 3c8uA 208 19.11 1zd8A 227 20.01 1e4eA 343 21.84 c.30.1.2,d.142.1.1 59221,59222 2eu8A 216 24.23 1knqA 175 24.52 c.37.1.17 72786 1p6xA 334 24.98 c.37.1.1 94195 2z0hA 197 25.42 1e4yA 214 26.58 c.37.1.1,g.41.2.1 31901,45181 1zin 217 26.86 1ly1A 181 27.91 c.37.1.1 74334 3cggA 195 28.74 1zinA 217 29.98 c.37.1.1,g.41.2.1 31915,45178 1ukz 203 30.58 1nn5A 215 31.33 c.37.1.1 85892 2cdnA 201 31.70 c.37.1.1 130289 2f6rA 281 31.96 2gzaA 361 32.40 1viaA 175 35.91 c.37.1.2 100754 1m7gA 211 35.98 c.37.1.4 78724 2fk8A 318 39.85 c.66.1.18 133648 2ak3A 226 40.55 c.37.1.1,g.41.2.1 31892,45193 2bbsA 290 41.13 2v26A 784 41.61 2bmeA 186 43.26 c.37.1.8 128790 1kpgA 287 44.47 c.66.1.18 68735 1g6oA 330 45.25 c.37.1.11 32430 2p5tB 253 45.75 2o14A 375 47.32 1zj6A 187 49.02 c.37.1.8 125145 1hv9A 456 49.47 b.81.1.4,c.68.1.5 28060,34518 2a5yB 549 50.24 2ew1A 201 51.35 c.37.1.8 132446 1tq4A 413 54.09 c.37.1.8 107201 2c95A 196 54.75 3tmkA 216 58.97 c.37.1.1 31920 2rexB 197 59.38 2fuvA 549 59.45 2bkhA 814 60.44 1y81A 138 60.44 c.2.1.8 122731 1gtvA 214 62.63 c.37.1.1 70537 1rkbA 173 64.32 c.37.1.1 111854 2o57A 297 64.75 2ocgA 254 65.32 1t6cA 315 66.54 c.55.1.8,c.55.1.8 106558,106559 1vpvA 300 66.67 c.119.1.1 113975 1d2nA 272 67.35 c.37.1.20 32428 1zc6A 305 68.42 c.55.1.5,c.55.1.5 124888,124889 2hf2A 283 74.21 1gq6A 313 75.18 c.42.1.1 70341 1of1A 376 77.78 c.37.1.1 103924 2pzeA 229 78.40 1wx1A 335 82.83 1ltqA 301 85.00 c.108.1.9,c.37.1.1 78208,78209 2a5jA 191 88.58 c.37.1.8 126175 1lnsA 763 88.99 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1c4xA 285 89.64 c.69.1.10 34684