# List of top-scoring protein chains for T0421.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1s96A 219 1.62e-09 c.37.1.1 98740 2an9A 207 2.16e-09 c.37.1.1 127037 2j41A 207 2.42e-08 2ccgA 225 5.45e-07 2ccjA 205 7.37e-07 1ex7A 186 7.44e-07 c.37.1.1 59537 1s4qA 228 1.74e-06 c.37.1.1 98507 1znwA 207 1.82e-06 c.37.1.1 125412 1lvgA 198 1.86e-06 c.37.1.1 78242 1z8fA 228 3.61e-06 2pbrA 195 4.18e-06 4tmkA 213 5.13e-06 c.37.1.1 31930 2z0hA 197 9.26e-06 2qorA 204 6.92e-05 1z6gA 218 0.000191 1e9fA 217 0.000208 c.37.1.1 64811 1e98A 215 0.001182 c.37.1.1 64804 1e9eA 215 0.001184 c.37.1.1 64810 1nn5A 215 0.001224 c.37.1.1 85892 1nmyA 209 0.001475 c.37.1.1 85883 2plrA 213 0.003750 3tmkA 216 0.03036 c.37.1.1 31920 1gtvA 214 0.06077 c.37.1.1 70537 1ukzA 203 0.06089 c.37.1.1 31840 2jasA 206 0.3025 1kjwA 295 0.3084 b.34.2.1,c.37.1.1 68643,68644 1jxmA 301 0.3097 b.34.2.1,c.37.1.1 67420,67421 2jaqA 205 0.3121 1qf9A 194 0.3165 c.37.1.1 31848 3adkA 194 0.3599 c.37.1.1 31885 2rgxA 206 0.4367 2c95A 196 0.4593 2cdnA 201 0.5613 c.37.1.1 130289 2bbwA 246 0.7622 1p4sA 181 0.8378 c.37.1.1 94117 2femA 227 0.9412 1zm7A 230 0.9470 1kdoA 227 1.057 c.37.1.1 68478 2vp0A 250 1.068 2vp4A 230 1.071 2jcsA 230 1.116 1kgdA 180 1.412 c.37.1.1 68582 2qt1A 207 1.576 2bwjA 199 1.666 2qg6A 199 1.732 1tevA 196 1.798 c.37.1.1 106817 1ckeA 227 2.042 c.37.1.1 31846 2ixeA 271 2.053 2ixfA 271 2.055 2ixgA 271 2.109 1ftsA 295 2.331 a.24.13.1,c.37.1.10 16968,32279 2qy9A 309 2.417 2a30A 248 2.843 2cxxA 190 3.022 c.37.1.8 131013 1zakA 222 3.543 c.37.1.1,g.41.2.1 31913,45202 2eu8A 216 4.545 2p3sA 217 4.555 2qajA 217 4.564 1p3jA 217 4.605 c.37.1.1,g.41.2.1 94022,94023 2osbA 216 4.689 2oriA 216 4.727 1y63A 184 4.777 c.37.1.1 116494 2oo7A 217 4.882 1zp6A 191 5.025 c.37.1.25 125456 1n3bA 216 5.161 c.37.1.1 79959 1t3hA 214 5.179 c.37.1.1 99117 1vhtA 218 5.314 c.37.1.1 100700 2bdtA 189 5.420 c.37.1.25 128344 2ocpA 241 5.485 c.37.1.1 139012 3c8uA 208 5.897 2qrnA 280 5.946 2yvuA 186 6.356 1p5zB 263 6.402 c.37.1.1 87815 1akeA 214 6.854 c.37.1.1,g.41.2.1 31905,45185 2axpA 173 7.016 c.37.1.1 127497 2gszA 363 7.454 1s3gA 217 7.951 c.37.1.1,g.41.2.1 98433,98434 2ewvA 372 8.070 1xzpA 482 8.337 a.24.25.1,c.37.1.8,d.250.1.2 116254,116255,116256 2eyuA 261 8.508 1jjvA 206 9.375 c.37.1.1 71698 1rz3A 201 10.04 c.37.1.6 98132 2no7A 280 10.05 2pt7A 330 10.12 2zi6A 279 10.20 2zi3A 279 10.20 1qzxA 440 10.34 a.24.13.1,a.36.1.1,c.37.1.10 96711,96712,96713 3b9qA 302 10.71 1dvrA 220 11.07 c.37.1.1,g.41.2.1 31899,45200 2j37W 504 11.08 2ffaA 247 11.13 1lkxA 697 11.17 c.37.1.9 73981 1xefA 241 11.34 2ff7A 247 11.52 c.37.1.12 133377 2ffbA 247 11.52 2c9yA 242 11.60 1akyA 220 11.62 c.37.1.1,g.41.2.1 31896,45197 2pmkA 243 11.76 1mt0A 241 11.78 c.37.1.12 85096 1zinA 217 12.04 c.37.1.1,g.41.2.1 31915,45178 3akyA 220 12.23 c.37.1.1,g.41.2.1 31898,45199 1kagA 173 12.51 c.37.1.2 72249 2qm8A 337 12.62 3be4A 217 14.63 1rj9A 304 14.98 a.24.13.1,c.37.1.10 97553,97554 2og2A 359 15.30 2gksA 546 15.58 1njgA 250 15.61 c.37.1.20 85785 1ak2A 233 16.65 c.37.1.1,g.41.2.1 31894,45195 2j289 430 18.47 1vciA 373 18.70 b.40.6.3,b.40.6.3,c.37.1.12 113607,113608,113609 2pjzA 263 18.72 2f1rA 171 18.91 1v43A 372 18.97 b.40.6.3,b.40.6.3,c.37.1.12 113521,113522,113523 1mr3F 181 19.17 c.37.1.8 79422 2gaoA 208 19.26 c.37.1.8 134891 1jr3A 373 19.82 a.80.1.1,c.37.1.20 63245,63246 1xxiB 368 19.83 a.80.1.1,c.37.1.20 116185,116186 1j8mF 297 19.89 a.24.13.1,c.37.1.10 62742,62743 1qhxA 178 20.21 c.37.1.3 31936 3b5jA 243 21.14 1e4vA 214 22.42 c.37.1.1,g.41.2.1 31903,45183 1vplA 256 22.60 c.37.1.12 113966 2v3cC 432 22.72 1ofhA 310 22.91 c.37.1.20 86948 1zd8A 227 23.38 1vmaA 306 23.48 a.24.13.1,c.37.1.10 108887,108888 2yz2A 266 24.10 1mozA 183 24.19 c.37.1.8 79368 1jj7A 260 24.77 c.37.1.12 63114 1f6bA 198 25.09 c.37.1.8 64986 2fmxA 195 27.09 c.37.1.8 133796 2ak3A 226 28.03 c.37.1.1,g.41.2.1 31892,45193 2h92A 219 28.26 1z47A 355 28.45 1f3oA 235 29.24 c.37.1.12 59631 1l2tA 235 29.71 c.37.1.12 73514 1nksA 194 29.92 c.37.1.1 31886 2hydA 578 30.00 c.37.1.12,f.37.1.1 136875,136876 2gzaA 361 31.72 2ga8A 359 33.08 1ihuA 589 33.28 c.37.1.10,c.37.1.10 62394,62395 2j7pD 283 35.18 a.24.13.1,c.37.1.10 138123,138124 2iylD 284 35.30 a.24.13.1,c.37.1.10 137801,137802 2rcnA 358 35.98 2fa9A 189 36.21 2ihyA 279 36.99 2q9cA 304 37.26 1okkD 303 37.27 a.24.13.1,c.37.1.10 93261,93262 1np6A 174 38.22 c.37.1.10 85954 1g41A 444 40.45 c.37.1.20 32450 1sgwA 214 40.85 c.37.1.12 105541 1p9rA 418 42.39 c.37.1.11 94399 1e4yA 214 42.98 c.37.1.1,g.41.2.1 31901,45181 1u0lA 301 43.16 b.40.4.5,c.37.1.8 107551,107552 1p9nA 170 43.40 c.37.1.10 87997 2it1A 362 44.14 1j8yF 297 45.26 a.24.13.1,c.37.1.10 62747,62748 1gajA 257 46.00 c.37.1.12 60416 2iyvA 184 46.04 c.37.1.2 137812 2bifA 469 46.24 c.37.1.7,c.60.1.4 31963,34009 1bifA 469 46.34 c.37.1.7,c.60.1.4 31961,34003 3bifA 468 46.66 c.37.1.7,c.60.1.4 31962,34008 2g1kA 176 46.72 c.37.1.2 134519 1puiA 210 46.79 c.37.1.8 88292 2grjA 192 47.44 2j3eA 249 48.67 1viaA 175 49.60 c.37.1.2 100754 2rkoA 331 49.60 3bb3A 262 51.52 3bb4A 262 51.88 1r8qA 181 53.62 c.37.1.8 97243 2i3bA 189 53.83 1gvnB 287 54.69 c.37.1.21 76354 2rhmA 193 54.82 1hurA 180 55.25 c.37.1.8 32052 1yqtA 538 57.06 2a5dA 175 57.25 c.37.1.8 126172 1ji0A 240 57.71 c.37.1.12 71665 2h57A 190 58.41 2nq2C 253 59.15 1e0sA 174 59.27 c.37.1.8 32057 1uptA 171 60.49 c.37.1.8 99767 1g8pA 350 60.55 c.37.1.20 60376 1sxjB 323 61.43 a.80.1.1,c.37.1.20 106083,106084 1m7gA 211 61.64 c.37.1.4 78724 2qp9X 355 62.32 1svmA 377 62.58 c.37.1.20 112126 2h1lA 370 62.96 c.37.1.20 135947 1n25A 368 63.08 c.37.1.20 85264 1g9xA 257 64.29 c.37.1.12 76219 2p5tB 253 64.53 1mv5A 243 65.90 c.37.1.12 91469 2k3aA 155 66.74 1r4aA 165 69.21 c.37.1.8 96986 1g6hA 257 69.30 c.37.1.12 60318 2bboA 291 74.49 1t9hA 307 75.36 b.40.4.5,c.37.1.8 112358,112359 2yv5A 302 80.86 2b6hA 192 84.55 c.37.1.8 127994 1uj2A 252 85.87 c.37.1.6 99452 1xrjA 261 87.28 c.37.1.6 122256 1xmjA 290 88.24 c.37.1.12 115494 2yyzA 359 89.02 1xmiA 291 89.21 c.37.1.12 115489 2px0A 296 89.48