# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2j41A 207 6.87e-11 2qorA 204 1.09e-10 1z6gA 218 1.46e-10 1znwA 207 1.71e-10 c.37.1.1 125412 1p5zB 263 6.34e-10 c.37.1.1 87815 1z8fA 228 1.07e-09 2ccjA 205 1.11e-09 2pbrA 195 1.42e-09 4tmkA 213 1.97e-09 c.37.1.1 31930 1kjwA 295 5.18e-09 b.34.2.1,c.37.1.1 68643,68644 1gtvA 214 6.37e-08 c.37.1.1 70537 2plrA 213 8.77e-08 2z0hA 197 2.86e-07 1t0hB 224 3.59e-07 c.37.1.1 106208 1ex7A 186 6.29e-07 c.37.1.1 59537 2vp4A 230 6.79e-07 1t3lA 337 8.89e-07 b.34.2.1,c.37.1.1 106358,106359 1p6xA 334 1.96e-06 c.37.1.1 94195 2axpA 173 2.57e-06 c.37.1.1 127497 1qhiA 366 2.68e-06 c.37.1.1 31860 1ukzA 203 3.14e-06 c.37.1.1 31840 2bwjA 199 3.36e-06 1s4qA 228 3.51e-06 c.37.1.1 98507 1e2kA 331 3.60e-06 c.37.1.1 31854 1zm7A 230 8.51e-06 1of1A 376 9.13e-06 c.37.1.1 103924 1oe0A 230 1.37e-05 c.37.1.1 92788 1qhxA 178 1.42e-05 c.37.1.3 31936 2cdnA 201 1.49e-05 c.37.1.1 130289 2c95A 196 1.64e-05 1y63A 184 2.37e-05 c.37.1.1 116494 1ki9A 192 2.57e-05 c.37.1.1 84404 1ukz 203 4.26e-05 1knqA 175 9.28e-05 c.37.1.17 72786 2qgnA 322 0.000120 1qf9A 194 0.000148 c.37.1.1 31848 1ckeA 227 0.000187 c.37.1.1 31846 1vhtA 218 0.000221 c.37.1.1 100700 1xrjA 261 0.000278 c.37.1.6 122256 1uj2A 252 0.000305 c.37.1.6 99452 3tmkA 216 0.000362 c.37.1.1 31920 1gky 187 0.000571 1kgdA 180 0.000656 c.37.1.1 68582 1e4yA 214 0.000673 c.37.1.1,g.41.2.1 31901,45181 2f6rA 281 0.000841 1zd8A 227 0.001000 3c8uA 208 0.001129 2an9A 207 0.001367 c.37.1.1 127037 1e6cA 173 0.001877 c.37.1.2 59296 3crrA 323 0.001886 1kdoA 227 0.002387 c.37.1.1 68478 1nksA 194 0.002453 c.37.1.1 31886 2ax4A 198 0.002806 2ak3A 226 0.004268 c.37.1.1,g.41.2.1 31892,45193 2eu8A 216 0.006137 2iyvA 184 0.006707 c.37.1.2 137812 1ltqA 301 0.006754 c.108.1.9,c.37.1.1 78208,78209 2g1kA 176 0.007519 c.37.1.2 134519 1ak2A 233 0.008249 c.37.1.1,g.41.2.1 31894,45195 1n3bA 216 0.008484 c.37.1.1 79959 2ze7A 253 0.01014 1p3jA 217 0.01291 c.37.1.1,g.41.2.1 94022,94023 2rgxA 206 0.01498 1jjvA 206 0.01735 c.37.1.1 71698 1akyA 220 0.01850 c.37.1.1,g.41.2.1 31896,45197 1khtA 192 0.02093 c.37.1.1 84401 2bdtA 189 0.02221 c.37.1.25 128344 1rkbA 173 0.02378 c.37.1.1 111854 1zin 217 0.02594 2rhmA 193 0.02643 1viaA 175 0.02646 c.37.1.2 100754 2p67A 341 0.02806 2qt1A 207 0.03404 3be4A 217 0.03700 1zuhA 168 0.03918 1zinA 217 0.04025 c.37.1.1,g.41.2.1 31915,45178 1nn5A 215 0.04586 c.37.1.1 85892 2yvuA 186 0.04619 1kagA 173 0.06377 c.37.1.2 72249 1s96A 219 0.07012 c.37.1.1 98740 1ly1A 181 0.07229 c.37.1.1 74334 1m7gA 211 0.07388 c.37.1.4 78724 2pezA 179 0.07634 1xjcA 169 0.08377 c.37.1.10 115387 2orwA 184 0.1169 2f1rA 171 0.1302 2ga8A 359 0.2036 1nijA 318 0.2830 c.37.1.10,d.237.1.1 85741,85742 1np6A 174 0.3057 c.37.1.10 85954 1esmA 316 0.3129 c.37.1.6 31953 2eyuA 261 0.3607 2r44A 331 0.4046 2pt5A 168 0.4571 1sq5A 308 0.4863 c.37.1.6 105882 1xx6A 191 0.6741 c.37.1.24,g.39.1.14 116139,116140 2pt7A 330 0.6992 2hf9A 226 0.7571 1nlfA 279 0.7640 c.37.1.11 85850 1dekA 241 0.7816 c.37.1.1 31842 2p5tB 253 0.7904 1a7jA 290 0.9035 c.37.1.6 31952 2oap1 511 0.9069 2vhjA 331 0.9344 1e9rA 437 0.9508 c.37.1.11 64827 2og2A 359 0.9764 1g8fA 511 1.011 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 3b9qA 302 1.027 2d2eA 250 1.039 1htwA 158 1.204 c.37.1.18 71083 1w44A 331 1.330 c.37.1.11 114147 1njgA 250 1.367 c.37.1.20 85785 1zu4A 320 1.370 1in4A 334 1.495 a.4.5.11,c.37.1.20 62597,62598 1x6vA 630 1.511 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2cbzA 237 1.563 2k3aA 155 1.660 1sxjC 340 1.664 a.80.1.1,c.37.1.20 106085,106086 1pujA 282 1.874 c.37.1.8 88294 2qy9A 309 1.892 2grjA 192 1.946 1gvnB 287 1.962 c.37.1.21 76354 2bbsA 290 2.015 1vmaA 306 2.020 a.24.13.1,c.37.1.10 108887,108888 1tq4A 413 2.021 c.37.1.8 107201 1l2tA 235 2.065 c.37.1.12 73514 1a7j 290 2.161 1a5t 334 2.276 2pzeA 229 2.386 2ff7A 247 2.403 c.37.1.12 133377 1nsf 273 2.562 2pmkA 243 2.657 1vplA 256 2.764 c.37.1.12 113966 1j8mF 297 2.823 a.24.13.1,c.37.1.10 62742,62743 1tq6A 413 2.851 c.37.1.8 107202 1sxjA 511 2.979 a.80.1.1,c.37.1.20 106081,106082 1ihuA 589 2.994 c.37.1.10,c.37.1.10 62394,62395 1z47A 355 3.037 2gzaA 361 3.132 1ye8A 178 3.213 c.37.1.11 123010 1xmiA 291 3.406 c.37.1.12 115489 1b0uA 262 3.556 c.37.1.12 32370 1in6A 334 3.650 a.4.5.11,c.37.1.20 62601,62602 2fh5B 214 3.726 c.37.1.8 133478 1a5tA 334 3.801 a.80.1.1,c.37.1.20 18450,32423 1r0wA 286 3.866 c.37.1.12 96754 1n2zA 245 3.873 c.92.2.2 79865 1mkyA 439 4.035 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2ixeA 271 4.042 1ls1A 295 4.191 a.24.13.1,c.37.1.10 78170,78171 1g6hA 257 4.263 c.37.1.12 60318 1rz3A 201 4.310 c.37.1.6 98132 2v26A 784 4.390 1xbtA 193 4.553 c.37.1.24,g.39.1.14 115080,115081 1n4aA 252 4.607 c.92.2.2 85317 2jrnA 163 4.759 2px0A 296 5.172 2c9oA 456 5.334 1w9iA 770 5.392 1d0yA 761 5.518 b.34.3.1,c.37.1.9 24581,32178 2it1A 362 6.056 1rj9A 304 6.099 a.24.13.1,c.37.1.10 97553,97554 1lvk 762 6.163 1ji0A 240 6.286 c.37.1.12 71665 1xewX 182 6.353 c.37.1.12 115235 1tueA 212 6.490 c.37.1.20 107323 2pcjA 224 6.543 1sxjE 354 6.562 a.80.1.1,c.37.1.20 106089,106090 1g8yA 279 6.570 c.37.1.11 32302 1g6oA 330 6.753 c.37.1.11 32430 2akaA 776 6.771 1mvwA 840 7.004 i.15.1.1 79523 1gl6A 436 7.296 c.37.1.11 70259 1oxsC 353 7.677 b.40.6.3,c.37.1.12 87519,87520 1knxA 312 8.194 c.98.2.1,c.91.1.2 77459,77460 1w7jA 795 8.342 b.34.3.1,c.37.1.9 120688,120689 2bkhA 814 8.351 1n25A 368 8.709 c.37.1.20 85264 2r2aA 199 8.861 1svmA 377 9.261 c.37.1.20 112126 1j8yF 297 9.288 a.24.13.1,c.37.1.10 62747,62748 1d2nA 272 9.385 c.37.1.20 32428 1yrbA 262 9.804 c.37.1.10 123915 1oxxK 353 10.54 b.40.6.3,c.37.1.12 93715,93716 2a5yB 549 11.95 2ihyA 279 12.56 1lw7A 365 13.03 c.26.1.3,c.37.1.1 74295,74296 1wywA 230 13.47 2chgA 226 13.60 2qm8A 337 14.31 2akaB 299 14.52 c.37.1.8 126914 2hhjA 267 15.20 c.60.1.1 136497 1u0jA 267 15.47 c.37.1.20 107546 3b9pA 297 15.88 1w5tA 412 15.99 a.4.5.11,c.37.1.20 114255,114256 1g3qA 237 17.47 c.37.1.10 60237 3bosA 242 18.08 2qi9C 249 18.38 1us8A 147 19.25 c.37.1.12 99859 1xwiA 322 21.84 1ewqA 765 23.60 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1sgwA 214 24.10 c.37.1.12 105541 2gxaA 274 24.99 1fj2A 232 25.10 c.69.1.14 34720 2qm0A 275 25.10 1b5tA 275 27.42 c.1.23.1 29676 1cp2A 269 28.72 c.37.1.10 32269 1t9hA 307 29.88 b.40.4.5,c.37.1.8 112358,112359 3cox 507 29.88 2h17A 181 30.21 2h57A 190 30.37 1d6jA 211 32.14 c.37.1.4 31940 2yv5A 302 32.98 1lv7A 257 33.26 c.37.1.20 78232 1f6bA 198 33.95 c.37.1.8 64986 1vcoA 550 34.25 c.23.16.1,c.37.1.10 108508,108509 1h65A 270 34.41 c.37.1.8 65640 1f2tA 149 34.86 c.37.1.12 32373 1bifA 469 35.59 c.37.1.7,c.60.1.4 31961,34003 1ycdA 243 35.63 1g291 372 39.15 2b8wA 328 39.38 1ko7A 314 41.99 c.98.2.1,c.91.1.2 72797,72798 2dr3A 247 42.32 2iutA 574 42.35 2f7lA 455 42.48 1srvA 145 43.99 c.8.5.1 30817 1tca 317 44.22 1jx2B 315 44.71 c.37.1.8 67404 2pjzA 263 46.37 1ny6A 267 46.73 c.37.1.20 92321 1w36D 608 47.98 c.37.1.19,c.37.1.19 114128,114129 1fnnA 389 48.98 a.4.5.11,c.37.1.20 16129,32426 1eg7A 557 50.17 c.37.1.10 32241 1jbkA 195 51.03 c.37.1.20 71631 1wcv1 257 51.24 1cr1A 296 53.36 c.37.1.11 32286 1mwmA 320 55.28 c.55.1.1,c.55.1.1 79580,79581 1qhlA 227 57.13 c.37.1.12 32382 2cvhA 220 59.32 2nq2C 253 61.05 1efdN 266 61.42 c.92.2.1 35597 1tuoA 464 62.03 2z83A 459 63.32 1l6xA 207 63.58 b.1.1.2,b.1.1.2 73642,73643 2r6fA 972 67.40 1t2aA 375 67.68 c.2.1.2 99078 2dkaA 544 69.40 2oblA 347 70.32 2f7tA 227 70.76 2fnaA 357 73.88 a.4.5.11,c.37.1.20 133809,133810 2qmoA 220 74.61 2jdiD 482 75.40 a.69.1.1,b.49.1.1,c.37.1.11 138263,138264,138265 3c5cA 187 75.96 2f5xA 312 76.38 2hfkA 319 76.43 1zxxA 319 77.93 2ffqA 171 79.41 1gt6A 269 80.66 c.69.1.17 76342 1kid 203 80.76 1qopA 268 81.69 c.1.2.4 28570 1mugA 168 81.77 c.18.1.2 31030 1yzqA 170 82.22 c.37.1.8 124286 1i52A 236 84.50 c.68.1.13 61767 2ewsA 287 84.91 2z1aA 552 86.76 2g6bA 180 86.82 c.37.1.8 134701 1gmlA 178 88.24 c.8.5.2 70273 1v39 322 89.24 2phzA 311 89.62