# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qorA 204 1.68e-09 2j41A 207 2.20e-09 1z6gA 218 2.56e-09 1znwA 207 2.75e-09 c.37.1.1 125412 1p5zB 263 8.75e-09 c.37.1.1 87815 2ccjA 205 1.01e-08 2pbrA 195 1.35e-08 4tmkA 213 1.44e-08 c.37.1.1 31930 1z8fA 228 1.66e-08 1kjwA 295 1.14e-07 b.34.2.1,c.37.1.1 68643,68644 2plrA 213 8.30e-07 2z0hA 197 1.90e-06 1gtvA 214 1.97e-06 c.37.1.1 70537 1t0hB 224 2.55e-06 c.37.1.1 106208 1t3lA 337 4.10e-06 b.34.2.1,c.37.1.1 106358,106359 2vp4A 230 4.96e-06 1ex7A 186 5.61e-06 c.37.1.1 59537 1ukzA 203 7.52e-06 c.37.1.1 31840 1p6xA 334 8.43e-06 c.37.1.1 94195 2bwjA 199 1.14e-05 1qhiA 366 1.26e-05 c.37.1.1 31860 1s4qA 228 1.79e-05 c.37.1.1 98507 1e2kA 331 1.94e-05 c.37.1.1 31854 2axpA 173 2.02e-05 c.37.1.1 127497 1zm7A 230 2.57e-05 1oe0A 230 4.45e-05 c.37.1.1 92788 2cdnA 201 5.96e-05 c.37.1.1 130289 1of1A 376 6.44e-05 c.37.1.1 103924 1ki9A 192 7.59e-05 c.37.1.1 84404 1ukz 203 9.17e-05 2c95A 196 0.000123 1qhxA 178 0.000140 c.37.1.3 31936 1y63A 184 0.000208 c.37.1.1 116494 1xrjA 261 0.000296 c.37.1.6 122256 2qgnA 322 0.000301 1qf9A 194 0.000416 c.37.1.1 31848 1ckeA 227 0.000530 c.37.1.1 31846 1knqA 175 0.000541 c.37.1.17 72786 1uj2A 252 0.000622 c.37.1.6 99452 1vhtA 218 0.001032 c.37.1.1 100700 1e4yA 214 0.001924 c.37.1.1,g.41.2.1 31901,45181 3tmkA 216 0.002020 c.37.1.1 31920 1gky 187 0.002062 1kgdA 180 0.002629 c.37.1.1 68582 3c8uA 208 0.002701 1kdoA 227 0.002925 c.37.1.1 68478 2f6rA 281 0.003255 1nksA 194 0.004835 c.37.1.1 31886 1zd8A 227 0.004859 3crrA 323 0.004919 2an9A 207 0.006253 c.37.1.1 127037 2ak3A 226 0.009147 c.37.1.1,g.41.2.1 31892,45193 1e6cA 173 0.01218 c.37.1.2 59296 2eu8A 216 0.01354 1n3bA 216 0.02092 c.37.1.1 79959 1jjvA 206 0.02178 c.37.1.1 71698 2ze7A 253 0.02631 2ax4A 198 0.02699 2qt1A 207 0.02766 2rgxA 206 0.03004 2iyvA 184 0.03096 c.37.1.2 137812 1khtA 192 0.03133 c.37.1.1 84401 1ltqA 301 0.03210 c.108.1.9,c.37.1.1 78208,78209 1ak2A 233 0.03698 c.37.1.1,g.41.2.1 31894,45195 2g1kA 176 0.03856 c.37.1.2 134519 1akyA 220 0.05724 c.37.1.1,g.41.2.1 31896,45197 1rkbA 173 0.05873 c.37.1.1 111854 2bdtA 189 0.06049 c.37.1.25 128344 1p3jA 217 0.06821 c.37.1.1,g.41.2.1 94022,94023 1zin 217 0.07042 2p67A 341 0.07278 1nn5A 215 0.07763 c.37.1.1 85892 3be4A 217 0.08991 1zinA 217 0.09189 c.37.1.1,g.41.2.1 31915,45178 1zuhA 168 0.09603 1viaA 175 0.1355 c.37.1.2 100754 2rhmA 193 0.1438 1s96A 219 0.1450 c.37.1.1 98740 1xjcA 169 0.1674 c.37.1.10 115387 1m7gA 211 0.1749 c.37.1.4 78724 2yvuA 186 0.1813 2r44A 331 0.1920 2orwA 184 0.2253 2f1rA 171 0.2873 2pezA 179 0.2957 2ga8A 359 0.3004 1kagA 173 0.3646 c.37.1.2 72249 1ly1A 181 0.3818 c.37.1.1 74334 1np6A 174 0.4175 c.37.1.10 85954 2pt5A 168 0.5407 2eyuA 261 0.6027 1sq5A 308 0.7145 c.37.1.6 105882 1esmA 316 0.7272 c.37.1.6 31953 1dekA 241 0.7313 c.37.1.1 31842 1nijA 318 0.8314 c.37.1.10,d.237.1.1 85741,85742 2p5tB 253 1.123 1xx6A 191 1.247 c.37.1.24,g.39.1.14 116139,116140 1a7jA 290 1.275 c.37.1.6 31952 1e9rA 437 1.375 c.37.1.11 64827 2vhjA 331 1.470 2oap1 511 1.571 1pujA 282 1.627 c.37.1.8 88294 1w44A 331 1.685 c.37.1.11 114147 1tq4A 413 2.105 c.37.1.8 107201 2grjA 192 2.186 2og2A 359 2.192 1g8fA 511 2.233 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1htwA 158 2.376 c.37.1.18 71083 3b9qA 302 2.384 1zu4A 320 2.592 2k3aA 155 2.615 1a7j 290 2.646 2cbzA 237 2.713 2gzaA 361 3.020 2bbsA 290 3.090 1nlfA 279 3.367 c.37.1.11 85850 1tq6A 413 3.499 c.37.1.8 107202 2pt7A 330 3.597 2ff7A 247 3.678 c.37.1.12 133377 2pzeA 229 3.696 1njgA 250 3.899 c.37.1.20 85785 1a5t 334 4.082 1xmiA 291 4.127 c.37.1.12 115489 1sxjA 511 4.151 a.80.1.1,c.37.1.20 106081,106082 1vplA 256 4.162 c.37.1.12 113966 2hf9A 226 4.398 2qy9A 309 4.599 1in4A 334 4.712 a.4.5.11,c.37.1.20 62597,62598 2pmkA 243 4.806 2ixeA 271 4.858 1vmaA 306 4.883 a.24.13.1,c.37.1.10 108887,108888 2fh5B 214 4.900 c.37.1.8 133478 1sxjC 340 5.023 a.80.1.1,c.37.1.20 106085,106086 1j8mF 297 5.026 a.24.13.1,c.37.1.10 62742,62743 1nsf 273 5.395 1ihuA 589 5.971 c.37.1.10,c.37.1.10 62394,62395 2d2eA 250 6.005 1xwiA 322 6.139 1z47A 355 6.236 1b0uA 262 6.285 c.37.1.12 32370 1ye8A 178 6.538 c.37.1.11 123010 2c9oA 456 6.811 1g6hA 257 6.865 c.37.1.12 60318 1rj9A 304 7.040 a.24.13.1,c.37.1.10 97553,97554 1l2tA 235 7.374 c.37.1.12 73514 1w9iA 770 7.702 1svmA 377 7.859 c.37.1.20 112126 1gvnB 287 7.918 c.37.1.21 76354 2v26A 784 7.925 1n2zA 245 7.954 c.92.2.2 79865 1ls1A 295 8.141 a.24.13.1,c.37.1.10 78170,78171 1mvwA 840 8.222 i.15.1.1 79523 1x6vA 630 8.388 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2bkhA 814 8.515 1r0wA 286 8.575 c.37.1.12 96754 1d0yA 761 8.642 b.34.3.1,c.37.1.9 24581,32178 2akaA 776 8.814 1lvk 762 8.988 1w7jA 795 9.060 b.34.3.1,c.37.1.9 120688,120689 2hhjA 267 9.228 c.60.1.1 136497 1g6oA 330 9.301 c.37.1.11 32430 2jrnA 163 9.426 2px0A 296 9.474 1tueA 212 9.637 c.37.1.20 107323 1n25A 368 9.719 c.37.1.20 85264 1ji0A 240 9.820 c.37.1.12 71665 1a5tA 334 10.03 a.80.1.1,c.37.1.20 18450,32423 1mkyA 439 10.40 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1in6A 334 10.52 a.4.5.11,c.37.1.20 62601,62602 1knxA 312 10.54 c.98.2.1,c.91.1.2 77459,77460 1n4aA 252 11.42 c.92.2.2 85317 1sxjE 354 11.47 a.80.1.1,c.37.1.20 106089,106090 1yrbA 262 11.48 c.37.1.10 123915 2chgA 226 12.03 1rz3A 201 12.09 c.37.1.6 98132 1xbtA 193 12.81 c.37.1.24,g.39.1.14 115080,115081 2r2aA 199 12.98 2qi9C 249 13.18 2it1A 362 13.38 1g8yA 279 13.67 c.37.1.11 32302 2pcjA 224 14.37 1j8yF 297 15.19 a.24.13.1,c.37.1.10 62747,62748 1gl6A 436 16.19 c.37.1.11 70259 3b9pA 297 16.49 1w5tA 412 16.86 a.4.5.11,c.37.1.20 114255,114256 1oxsC 353 19.21 b.40.6.3,c.37.1.12 87519,87520 2qm8A 337 20.29 1lw7A 365 21.02 c.26.1.3,c.37.1.1 74295,74296 2akaB 299 21.45 c.37.1.8 126914 1d2nA 272 21.64 c.37.1.20 32428 2a5yB 549 22.21 2h57A 190 22.35 1ewqA 765 23.45 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1sgwA 214 24.71 c.37.1.12 105541 1f2tA 149 24.89 c.37.1.12 32373 2h17A 181 25.41 2ihyA 279 25.92 1wywA 230 27.08 1h65A 270 28.44 c.37.1.8 65640 3cox 507 30.25 1oxxK 353 30.93 b.40.6.3,c.37.1.12 93715,93716 2r6fA 972 33.43 1g3qA 237 34.61 c.37.1.10 60237 2yv5A 302 34.93 2iutA 574 35.96 1b5tA 275 36.39 c.1.23.1 29676 1t9hA 307 36.69 b.40.4.5,c.37.1.8 112358,112359 2b8wA 328 37.34 1fj2A 232 37.96 c.69.1.14 34720 2qm0A 275 38.81 2dkaA 544 39.74 2gxaA 274 41.13 1lv7A 257 43.41 c.37.1.20 78232 1d6jA 211 44.33 c.37.1.4 31940 1wz8A 264 44.66 c.14.1.3 121483 1f6bA 198 45.31 c.37.1.8 64986 1ny6A 267 46.06 c.37.1.20 92321 2cvhA 220 46.10 1ko7A 314 46.43 c.98.2.1,c.91.1.2 72797,72798 1us8A 147 46.59 c.37.1.12 99859 1srvA 145 48.25 c.8.5.1 30817 1mwmA 320 50.40 c.55.1.1,c.55.1.1 79580,79581 3bosA 242 51.41 1jx2B 315 53.31 c.37.1.8 67404 2oblA 347 54.21 1g55A 343 54.36 c.66.1.26 34247 1cp2A 269 56.34 c.37.1.10 32269 1w36D 608 56.41 c.37.1.19,c.37.1.19 114128,114129 2f7lA 455 56.44 1u0jA 267 57.13 c.37.1.20 107546 3c5cA 187 58.24 2nq2C 253 58.67 1kid 203 59.40 2dr3A 247 59.44 1ycdA 243 59.72 1jbkA 195 61.90 c.37.1.20 71631 1qhlA 227 62.25 c.37.1.12 32382 2j4dA 525 64.15 2jdiD 482 64.37 a.69.1.1,b.49.1.1,c.37.1.11 138263,138264,138265 1xewX 182 66.20 c.37.1.12 115235 1kidA 203 67.27 c.8.5.1 30771 1tibA 269 68.58 c.69.1.17 34738 2p65A 187 68.71 1fnnA 389 70.30 a.4.5.11,c.37.1.20 16129,32426 2gdjA 264 72.46 c.37.1.11 135018 2pjzA 263 72.79 1g291 372 77.32 2fnaA 357 79.08 a.4.5.11,c.37.1.20 133809,133810 1tca 317 81.59 1gt6A 269 83.52 c.69.1.17 76342 2z1aA 552 83.83 2gj8A 172 85.31 c.37.1.8 135270 1eg7A 557 86.57 c.37.1.10 32241 1tuoA 464 87.12 1bifA 469 87.39 c.37.1.7,c.60.1.4 31961,34003 2ewsA 287 87.91