# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1z6gA 218 2.39e-11 2j41A 207 4.35e-11 2qorA 204 4.61e-11 1znwA 207 6.53e-11 c.37.1.1 125412 2pbrA 195 9.43e-11 1p5zB 263 9.48e-11 c.37.1.1 87815 4tmkA 213 1.93e-10 c.37.1.1 31930 2ccjA 205 2.13e-10 1z8fA 228 3.78e-10 1kjwA 295 7.01e-09 b.34.2.1,c.37.1.1 68643,68644 1gtvA 214 8.17e-09 c.37.1.1 70537 2plrA 213 2.82e-08 2z0hA 197 3.80e-08 1t0hB 224 1.28e-07 c.37.1.1 106208 1ex7A 186 1.31e-07 c.37.1.1 59537 2vp4A 230 2.24e-07 1t3lA 337 4.33e-07 b.34.2.1,c.37.1.1 106358,106359 1ukzA 203 5.85e-07 c.37.1.1 31840 2bwjA 199 7.69e-07 1qhiA 366 1.08e-06 c.37.1.1 31860 1s4qA 228 1.40e-06 c.37.1.1 98507 1p6xA 334 1.60e-06 c.37.1.1 94195 1zm7A 230 1.95e-06 1e2kA 331 2.30e-06 c.37.1.1 31854 2axpA 173 3.33e-06 c.37.1.1 127497 1ki9A 192 3.60e-06 c.37.1.1 84404 1oe0A 230 6.46e-06 c.37.1.1 92788 1ukz 203 7.42e-06 2c95A 196 8.47e-06 2cdnA 201 1.00e-05 c.37.1.1 130289 1of1A 376 1.58e-05 c.37.1.1 103924 1qhxA 178 1.69e-05 c.37.1.3 31936 1qf9A 194 1.90e-05 c.37.1.1 31848 1knqA 175 2.56e-05 c.37.1.17 72786 2qgnA 322 2.85e-05 1y63A 184 3.20e-05 c.37.1.1 116494 1xrjA 261 5.86e-05 c.37.1.6 122256 1ckeA 227 6.20e-05 c.37.1.1 31846 1vhtA 218 6.84e-05 c.37.1.1 100700 1uj2A 252 0.000130 c.37.1.6 99452 3tmkA 216 0.000196 c.37.1.1 31920 1zd8A 227 0.000229 1e4yA 214 0.000277 c.37.1.1,g.41.2.1 31901,45181 1kgdA 180 0.000292 c.37.1.1 68582 1gky 187 0.000419 1e6cA 173 0.000445 c.37.1.2 59296 2f6rA 281 0.000573 1nksA 194 0.000612 c.37.1.1 31886 1kdoA 227 0.000672 c.37.1.1 68478 3crrA 323 0.000898 2ax4A 198 0.000923 1p3jA 217 0.001174 c.37.1.1,g.41.2.1 94022,94023 3c8uA 208 0.001562 2ak3A 226 0.001573 c.37.1.1,g.41.2.1 31892,45193 1zin 217 0.001685 2an9A 207 0.001755 c.37.1.1 127037 2rgxA 206 0.001840 2eu8A 216 0.002142 2ze7A 253 0.002977 1ak2A 233 0.003915 c.37.1.1,g.41.2.1 31894,45195 2g1kA 176 0.004322 c.37.1.2 134519 2bdtA 189 0.004721 c.37.1.25 128344 1n3bA 216 0.004817 c.37.1.1 79959 1ltqA 301 0.004989 c.108.1.9,c.37.1.1 78208,78209 1nn5A 215 0.005323 c.37.1.1 85892 3be4A 217 0.007046 2iyvA 184 0.007295 c.37.1.2 137812 1akyA 220 0.007617 c.37.1.1,g.41.2.1 31896,45197 1khtA 192 0.01088 c.37.1.1 84401 2qt1A 207 0.01133 1jjvA 206 0.01179 c.37.1.1 71698 1viaA 175 0.01246 c.37.1.2 100754 1zinA 217 0.01360 c.37.1.1,g.41.2.1 31915,45178 2yvuA 186 0.01488 2p67A 341 0.01695 1m7gA 211 0.02120 c.37.1.4 78724 2pezA 179 0.02368 2rhmA 193 0.02556 1rkbA 173 0.02595 c.37.1.1 111854 2f1rA 171 0.02873 2orwA 184 0.03430 1s96A 219 0.03849 c.37.1.1 98740 1ly1A 181 0.03999 c.37.1.1 74334 1kagA 173 0.04238 c.37.1.2 72249 1xjcA 169 0.04647 c.37.1.10 115387 1zuhA 168 0.05311 1np6A 174 0.08442 c.37.1.10 85954 2pt5A 168 0.1053 2r44A 331 0.1060 1a7jA 290 0.2003 c.37.1.6 31952 1xx6A 191 0.2165 c.37.1.24,g.39.1.14 116139,116140 2eyuA 261 0.2358 2ga8A 359 0.3268 1esmA 316 0.3318 c.37.1.6 31953 1e9rA 437 0.3571 c.37.1.11 64827 1w44A 331 0.4147 c.37.1.11 114147 1sq5A 308 0.5174 c.37.1.6 105882 1a7j 290 0.5278 2vhjA 331 0.5487 2oap1 511 0.5620 1in4A 334 0.5982 a.4.5.11,c.37.1.20 62597,62598 2bbsA 290 0.6050 1x6vA 630 0.6641 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2gzaA 361 0.9048 1nlfA 279 0.9919 c.37.1.11 85850 2p5tB 253 1.090 2cbzA 237 1.124 3b9qA 302 1.162 1xmiA 291 1.194 c.37.1.12 115489 1nijA 318 1.222 c.37.1.10,d.237.1.1 85741,85742 1g8fA 511 1.274 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 2hf9A 226 1.295 1z47A 355 1.368 2qy9A 309 1.443 2ixeA 271 1.457 1n2zA 245 1.498 c.92.2.2 79865 2ff7A 247 1.523 c.37.1.12 133377 2k3aA 155 1.616 2og2A 359 1.650 1l2tA 235 1.673 c.37.1.12 73514 1zu4A 320 1.675 2d2eA 250 1.722 1xbtA 193 1.773 c.37.1.24,g.39.1.14 115080,115081 1njgA 250 1.774 c.37.1.20 85785 2pmkA 243 1.795 1dekA 241 1.843 c.37.1.1 31842 1vplA 256 1.898 c.37.1.12 113966 1j8mF 297 1.911 a.24.13.1,c.37.1.10 62742,62743 1rz3A 201 1.956 c.37.1.6 98132 2pzeA 229 2.011 1r0wA 286 2.123 c.37.1.12 96754 1g6hA 257 2.152 c.37.1.12 60318 1g8yA 279 2.172 c.37.1.11 32302 1sxjA 511 2.179 a.80.1.1,c.37.1.20 106081,106082 1sxjC 340 2.179 a.80.1.1,c.37.1.20 106085,106086 1a5t 334 2.404 1ji0A 240 2.477 c.37.1.12 71665 1g6oA 330 2.560 c.37.1.11 32430 1n4aA 252 2.608 c.92.2.2 85317 1vmaA 306 2.632 a.24.13.1,c.37.1.10 108887,108888 1in6A 334 2.770 a.4.5.11,c.37.1.20 62601,62602 2qi9C 249 3.011 1gvnB 287 3.012 c.37.1.21 76354 2grjA 192 3.072 2fh5B 214 3.160 c.37.1.8 133478 1ls1A 295 3.464 a.24.13.1,c.37.1.10 78170,78171 1w9iA 770 3.551 1d0yA 761 3.584 b.34.3.1,c.37.1.9 24581,32178 1tq4A 413 3.693 c.37.1.8 107201 1ihuA 589 3.824 c.37.1.10,c.37.1.10 62394,62395 1nsf 273 3.985 2it1A 362 4.111 1pujA 282 4.132 c.37.1.8 88294 1t9hA 307 4.465 b.40.4.5,c.37.1.8 112358,112359 2bkhA 814 4.535 1lvk 762 4.570 1b0uA 262 4.571 c.37.1.12 32370 2hhjA 267 4.778 c.60.1.1 136497 2v26A 784 4.812 2akaA 776 4.825 2pt7A 330 4.995 3bosA 242 5.490 1qopA 268 5.522 c.1.2.4 28570 1w7jA 795 5.739 b.34.3.1,c.37.1.9 120688,120689 1ye8A 178 6.072 c.37.1.11 123010 2c9oA 456 6.073 1bifA 469 6.086 c.37.1.7,c.60.1.4 31961,34003 1sxjE 354 6.090 a.80.1.1,c.37.1.20 106089,106090 1w5tA 412 6.236 a.4.5.11,c.37.1.20 114255,114256 1htwA 158 6.258 c.37.1.18 71083 1knxA 312 6.445 c.98.2.1,c.91.1.2 77459,77460 2qm8A 337 6.596 1a5tA 334 6.659 a.80.1.1,c.37.1.20 18450,32423 2pcjA 224 6.756 2r2aA 199 7.043 1mvwA 840 7.446 i.15.1.1 79523 1tueA 212 7.485 c.37.1.20 107323 1rj9A 304 7.512 a.24.13.1,c.37.1.10 97553,97554 2ihyA 279 7.691 1sgwA 214 7.740 c.37.1.12 105541 5nul 138 7.934 2jrnA 163 8.464 2px0A 296 8.540 1xwiA 322 8.649 2dr3A 247 9.97 1svmA 377 10.32 c.37.1.20 112126 1oxsC 353 10.70 b.40.6.3,c.37.1.12 87519,87520 1gl6A 436 11.42 c.37.1.11 70259 1efdN 266 11.55 c.92.2.1 35597 1oxxK 353 11.75 b.40.6.3,c.37.1.12 93715,93716 2r6fA 972 11.83 1j8yF 297 12.61 a.24.13.1,c.37.1.10 62747,62748 1d2nA 272 12.67 c.37.1.20 32428 2chgA 226 12.96 1yrbA 262 13.14 c.37.1.10 123915 1g55A 343 13.31 c.66.1.26 34247 1cp2A 269 13.70 c.37.1.10 32269 2z83A 459 13.95 1tca 317 13.98 2cvhA 220 14.86 2nq2C 253 15.76 1jx2B 315 16.15 c.37.1.8 67404 1mkyA 439 16.33 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1tq6A 413 16.89 c.37.1.8 107202 2pjzA 263 18.16 1ycdA 243 18.33 1srvA 145 18.54 c.8.5.1 30817 1f2tA 149 18.63 c.37.1.12 32373 2fdxA 138 18.68 c.23.5.1 31192 3b9pA 297 19.09 1d6jA 211 19.37 c.37.1.4 31940 1lv7A 257 19.82 c.37.1.20 78232 3bh0A 315 20.27 1wywA 230 21.34 2f7tA 227 21.66 3bs4A 260 21.67 1c7sA 858 21.73 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1n25A 368 21.96 c.37.1.20 85264 1lw7A 365 22.24 c.26.1.3,c.37.1.1 74295,74296 1us8A 147 23.24 c.37.1.12 99859 1bif 469 24.05 1kid 203 24.36 1jbkA 195 26.68 c.37.1.20 71631 1g3qA 237 26.84 c.37.1.10 60237 3cox 507 28.74 2qm0A 275 29.83 1b5tA 275 29.87 c.1.23.1 29676 1v93A 296 29.88 c.1.23.1 100532 1ewqA 765 30.95 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1ko7A 314 31.02 c.98.2.1,c.91.1.2 72797,72798 2oblA 347 31.56 1fj2A 232 31.83 c.69.1.14 34720 2reb 352 32.59 5nulA 138 32.71 c.23.5.1 31191 2akaB 299 33.00 c.37.1.8 126914 1kidA 203 33.04 c.8.5.1 30771 2yv5A 302 34.53 1eg7A 557 34.59 c.37.1.10 32241 1tcaA 317 35.63 c.69.1.17 34726 1xewX 182 36.64 c.37.1.12 115235 1yqtA 538 36.78 2r7aA 256 36.88 1pfkA 320 37.20 c.89.1.1 35575 7a3hA 303 37.52 c.1.8.3 28817 2iutA 574 38.82 2rebA 352 39.07 c.37.1.11,d.48.1.1 32282,38767 1vcoA 550 39.56 c.23.16.1,c.37.1.10 108508,108509 1zp4A 304 39.57 1qhlA 227 40.16 c.37.1.12 32382 1o5zA 442 40.87 c.59.1.2,c.72.2.2 92530,92531 2qmoA 220 43.49 2p65A 187 43.66 1gg4A 452 44.41 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 2gdjA 264 44.64 c.37.1.11 135018 1fnnA 389 45.13 a.4.5.11,c.37.1.20 16129,32426 1zxxA 319 45.99 1h65A 270 46.27 c.37.1.8 65640 1v39 322 46.32 1ofuA 320 46.65 c.32.1.1,d.79.2.1 86972,86973 3co4A 312 46.77 2h17A 181 49.46 1u6zA 513 50.93 a.211.1.5,c.55.1.8,c.55.1.8 119608,119609,119610 2i2wA 212 51.91 2uvkA 357 52.55 1wcv1 257 54.39 2f7lA 455 56.13 2ewsA 287 57.22 1sc6A 404 57.99 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1vljA 407 60.63 e.22.1.2 108832 2j4dA 525 62.31 1mwmA 320 62.45 c.55.1.1,c.55.1.1 79580,79581 2qmjA 870 65.32 2jdiD 482 66.24 a.69.1.1,b.49.1.1,c.37.1.11 138263,138264,138265 1ny6A 267 66.79 c.37.1.20 92321 2vqeI 128 67.28 1o51A 114 68.28 d.58.5.4 92480 1cr1A 296 68.39 c.37.1.11 32286 2chuA 296 69.05 c.92.2.4 130485 3mag 307 69.08 2v5xA 388 69.79 2phzA 311 71.43 2ivnA 330 71.97 1vpt 348 73.62 2g6bA 180 74.29 c.37.1.8 134701 1edtA 271 74.36 c.1.8.5 28993 2b8wA 328 74.70 1ionA 243 74.92 c.37.1.10 62633 1t2aA 375 75.61 c.2.1.2 99078 2pfkA 320 76.46 c.89.1.1 35577 2j00I 128 79.04 d.14.1.1 137847 2gxaA 274 81.29 2fnaA 357 81.46 a.4.5.11,c.37.1.20 133809,133810 1f6bA 198 82.40 c.37.1.8 64986 2hfkA 319 85.00 1f0nA 285 85.07 c.69.1.3 34636 1zi8A 236 85.47 1m5wA 243 85.81 c.1.24.1 84836 1u0jA 267 87.05 c.37.1.20 107546 2q8pA 260 89.61 1w36D 608 89.65 c.37.1.19,c.37.1.19 114128,114129