# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qorA 204 4.20e-11 2j41A 207 6.36e-11 1z6gA 218 9.08e-11 1znwA 207 1.00e-10 c.37.1.1 125412 1p5zB 263 2.61e-10 c.37.1.1 87815 1z8fA 228 4.61e-10 2ccjA 205 5.02e-10 4tmkA 213 6.12e-10 c.37.1.1 31930 2pbrA 195 6.77e-10 1kjwA 295 7.10e-09 b.34.2.1,c.37.1.1 68643,68644 2plrA 213 2.86e-08 1gtvA 214 2.97e-08 c.37.1.1 70537 1t0hB 224 1.12e-07 c.37.1.1 106208 1ex7A 186 2.03e-07 c.37.1.1 59537 2z0hA 197 2.10e-07 2vp4A 230 3.19e-07 1t3lA 337 4.91e-07 b.34.2.1,c.37.1.1 106358,106359 1p6xA 334 7.53e-07 c.37.1.1 94195 1ukzA 203 7.94e-07 c.37.1.1 31840 2bwjA 199 1.04e-06 1qhiA 366 1.05e-06 c.37.1.1 31860 1e2kA 331 1.60e-06 c.37.1.1 31854 1zm7A 230 1.65e-06 2axpA 173 1.80e-06 c.37.1.1 127497 1s4qA 228 1.94e-06 c.37.1.1 98507 2cdnA 201 2.57e-06 c.37.1.1 130289 1oe0A 230 3.70e-06 c.37.1.1 92788 1of1A 376 4.36e-06 c.37.1.1 103924 1ki9A 192 6.12e-06 c.37.1.1 84404 2c95A 196 9.63e-06 1ukz 203 9.70e-06 1y63A 184 1.01e-05 c.37.1.1 116494 1qf9A 194 1.84e-05 c.37.1.1 31848 1qhxA 178 1.92e-05 c.37.1.3 31936 1knqA 175 3.65e-05 c.37.1.17 72786 2qgnA 322 6.08e-05 1ckeA 227 7.19e-05 c.37.1.1 31846 3tmkA 216 0.000170 c.37.1.1 31920 1uj2A 252 0.000188 c.37.1.6 99452 1kgdA 180 0.000268 c.37.1.1 68582 2f6rA 281 0.000291 1vhtA 218 0.000307 c.37.1.1 100700 1kdoA 227 0.000329 c.37.1.1 68478 1xrjA 261 0.000332 c.37.1.6 122256 1e4yA 214 0.000493 c.37.1.1,g.41.2.1 31901,45181 1gky 187 0.000556 1e6cA 173 0.000580 c.37.1.2 59296 2ax4A 198 0.000585 1nksA 194 0.000843 c.37.1.1 31886 1zd8A 227 0.000886 3crrA 323 0.001458 3c8uA 208 0.001532 2an9A 207 0.001689 c.37.1.1 127037 1ltqA 301 0.001727 c.108.1.9,c.37.1.1 78208,78209 1zin 217 0.002520 2g1kA 176 0.002869 c.37.1.2 134519 2eu8A 216 0.003404 1ak2A 233 0.003787 c.37.1.1,g.41.2.1 31894,45195 2iyvA 184 0.003867 c.37.1.2 137812 1khtA 192 0.003947 c.37.1.1 84401 2rhmA 193 0.005446 1jjvA 206 0.005842 c.37.1.1 71698 2rgxA 206 0.005997 2bdtA 189 0.006449 c.37.1.25 128344 1p3jA 217 0.006586 c.37.1.1,g.41.2.1 94022,94023 1ly1A 181 0.006663 c.37.1.1 74334 1n3bA 216 0.006667 c.37.1.1 79959 1rkbA 173 0.009258 c.37.1.1 111854 2ak3A 226 0.01000 c.37.1.1,g.41.2.1 31892,45193 2ze7A 253 0.01028 1viaA 175 0.01036 c.37.1.2 100754 2yvuA 186 0.01608 2pezA 179 0.02030 1zinA 217 0.02387 c.37.1.1,g.41.2.1 31915,45178 1akyA 220 0.02399 c.37.1.1,g.41.2.1 31896,45197 2qt1A 207 0.02545 1zuhA 168 0.02849 3be4A 217 0.03289 2p67A 341 0.03468 1s96A 219 0.04049 c.37.1.1 98740 1m7gA 211 0.04349 c.37.1.4 78724 1nn5A 215 0.05322 c.37.1.1 85892 1kagA 173 0.09483 c.37.1.2 72249 1xjcA 169 0.1307 c.37.1.10 115387 2f1rA 171 0.1543 2pt5A 168 0.1556 2r44A 331 0.1879 1xx6A 191 0.2823 c.37.1.24,g.39.1.14 116139,116140 1e9rA 437 0.3089 c.37.1.11 64827 2eyuA 261 0.3139 1esmA 316 0.3200 c.37.1.6 31953 2ga8A 359 0.3439 1nijA 318 0.3447 c.37.1.10,d.237.1.1 85741,85742 2orwA 184 0.3997 1dekA 241 0.4108 c.37.1.1 31842 2oap1 511 0.4612 1sq5A 308 0.5075 c.37.1.6 105882 1nlfA 279 0.5204 c.37.1.11 85850 1a7jA 290 0.5331 c.37.1.6 31952 2grjA 192 0.5825 2hf9A 226 0.5886 1x6vA 630 0.7310 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1np6A 174 0.7865 c.37.1.10 85954 2vhjA 331 0.8687 2k3aA 155 1.047 1in4A 334 1.083 a.4.5.11,c.37.1.20 62597,62598 2ixeA 271 1.148 1vplA 256 1.158 c.37.1.12 113966 1l2tA 235 1.190 c.37.1.12 73514 1zu4A 320 1.289 3b9qA 302 1.347 2pt7A 330 1.350 1htwA 158 1.370 c.37.1.18 71083 1a7j 290 1.434 2bbsA 290 1.462 1sxjC 340 1.477 a.80.1.1,c.37.1.20 106085,106086 1g8fA 511 1.510 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1w44A 331 1.535 c.37.1.11 114147 1z47A 355 1.621 2og2A 359 1.621 1njgA 250 1.628 c.37.1.20 85785 1pujA 282 1.687 c.37.1.8 88294 2p5tB 253 1.707 2pmkA 243 1.807 1gvnB 287 1.813 c.37.1.21 76354 2cbzA 237 1.915 1vmaA 306 1.917 a.24.13.1,c.37.1.10 108887,108888 1n2zA 245 1.973 c.92.2.2 79865 2ff7A 247 2.003 c.37.1.12 133377 1g6hA 257 2.101 c.37.1.12 60318 2qy9A 309 2.166 1r0wA 286 2.323 c.37.1.12 96754 1tq4A 413 2.353 c.37.1.8 107201 2gzaA 361 2.465 1rz3A 201 2.532 c.37.1.6 98132 1g8yA 279 2.786 c.37.1.11 32302 2d2eA 250 2.952 2pzeA 229 2.978 1oxsC 353 3.037 b.40.6.3,c.37.1.12 87519,87520 1n4aA 252 3.089 c.92.2.2 85317 1sxjA 511 3.120 a.80.1.1,c.37.1.20 106081,106082 1ls1A 295 3.210 a.24.13.1,c.37.1.10 78170,78171 1oxxK 353 3.297 b.40.6.3,c.37.1.12 93715,93716 1j8mF 297 3.351 a.24.13.1,c.37.1.10 62742,62743 2pcjA 224 3.399 1b0uA 262 3.434 c.37.1.12 32370 1rj9A 304 3.491 a.24.13.1,c.37.1.10 97553,97554 1xmiA 291 3.514 c.37.1.12 115489 1ji0A 240 3.546 c.37.1.12 71665 2qi9C 249 3.657 2it1A 362 3.702 1ihuA 589 3.900 c.37.1.10,c.37.1.10 62394,62395 1tq6A 413 3.932 c.37.1.8 107202 1a5t 334 4.057 1ye8A 178 4.195 c.37.1.11 123010 1svmA 377 4.429 c.37.1.20 112126 1gl6A 436 4.828 c.37.1.11 70259 2px0A 296 4.883 1g6oA 330 5.291 c.37.1.11 32430 1mkyA 439 5.452 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1n25A 368 5.475 c.37.1.20 85264 1nsf 273 5.518 1yrbA 262 5.774 c.37.1.10 123915 1knxA 312 5.915 c.98.2.1,c.91.1.2 77459,77460 1xbtA 193 5.920 c.37.1.24,g.39.1.14 115080,115081 2fh5B 214 5.999 c.37.1.8 133478 2r2aA 199 6.256 1a5tA 334 6.263 a.80.1.1,c.37.1.20 18450,32423 2ihyA 279 6.621 2jrnA 163 6.902 2c9oA 456 7.180 1in6A 334 7.211 a.4.5.11,c.37.1.20 62601,62602 2chgA 226 7.413 2v26A 784 7.996 1sgwA 214 8.531 c.37.1.12 105541 2gxaA 274 8.710 1tueA 212 8.779 c.37.1.20 107323 1t9hA 307 9.068 b.40.4.5,c.37.1.8 112358,112359 1g291 372 10.27 1j8yF 297 10.29 a.24.13.1,c.37.1.10 62747,62748 2bkhA 814 10.40 1bifA 469 10.61 c.37.1.7,c.60.1.4 31961,34003 1ewqA 765 10.76 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1d0yA 761 12.11 b.34.3.1,c.37.1.9 24581,32178 2cvhA 220 13.20 1mvwA 840 13.58 i.15.1.1 79523 1f6bA 198 13.63 c.37.1.8 64986 1w9iA 770 13.74 1us8A 147 14.72 c.37.1.12 99859 1sxjE 354 14.99 a.80.1.1,c.37.1.20 106089,106090 1lvk 762 15.86 1lw7A 365 16.68 c.26.1.3,c.37.1.1 74295,74296 1d2nA 272 16.97 c.37.1.20 32428 1jx2B 315 17.96 c.37.1.8 67404 2akaA 776 17.96 1w5tA 412 18.36 a.4.5.11,c.37.1.20 114255,114256 3cox 507 18.70 1qhlA 227 18.81 c.37.1.12 32382 1u0jA 267 18.84 c.37.1.20 107546 2qm8A 337 19.70 2h57A 190 19.83 2akaB 299 19.83 c.37.1.8 126914 2h17A 181 20.07 1w7jA 795 20.42 b.34.3.1,c.37.1.9 120688,120689 2r6fA 972 21.02 2a5yB 549 21.89 1xewX 182 22.09 c.37.1.12 115235 3b9pA 297 22.43 2pjzA 263 22.83 1qopA 268 23.90 c.1.2.4 28570 1cp2A 269 24.40 c.37.1.10 32269 1g3qA 237 24.80 c.37.1.10 60237 1lv7A 257 25.55 c.37.1.20 78232 1tca 317 26.82 2j4dA 525 27.33 2qm0A 275 27.49 1d6jA 211 27.86 c.37.1.4 31940 2yv5A 302 28.87 2dr3A 247 28.95 1bif 469 29.33 2gdjA 264 30.86 c.37.1.11 135018 2nq2C 253 30.95 1efdN 266 31.25 c.92.2.1 35597 1ko7A 314 31.80 c.98.2.1,c.91.1.2 72797,72798 1cr1A 296 32.44 c.37.1.11 32286 2z83A 459 33.21 2q8pA 260 33.69 1mwmA 320 34.98 c.55.1.1,c.55.1.1 79580,79581 1f2tA 149 35.14 c.37.1.12 32373 1b5tA 275 36.14 c.1.23.1 29676 2hhjA 267 37.22 c.60.1.1 136497 1i4nA 251 43.29 c.1.2.4 71114 7a3hA 303 45.96 c.1.8.3 28817 1wcv1 257 46.09 3bs4A 260 48.80 1g55A 343 49.49 c.66.1.26 34247 2iutA 574 51.69 1yqtA 538 52.03 2jdiD 482 52.94 a.69.1.1,b.49.1.1,c.37.1.11 138263,138264,138265 2r7aA 256 53.05 1wywA 230 54.22 3bosA 242 54.69 2z1aA 552 55.33 1ycdA 243 56.24 2fnaA 357 56.69 a.4.5.11,c.37.1.20 133809,133810 2phzA 311 56.92 1ax4A 467 59.22 c.67.1.2 34391 1ofuA 320 59.49 c.32.1.1,d.79.2.1 86972,86973 2g6bA 180 61.72 c.37.1.8 134701 1jbkA 195 62.33 c.37.1.20 71631 1zxxA 319 63.68 2a9iA 113 63.95 2qgzA 308 64.70 2b8wA 328 68.17 2bonA 332 68.21 1kidA 203 70.96 c.8.5.1 30771 1xclA 235 71.50 c.66.1.16 115127 1i6lA 328 73.67 c.26.1.1 66041 1w36D 608 73.74 c.37.1.19,c.37.1.19 114128,114129 1srvA 145 74.85 c.8.5.1 30817 1xwiA 322 75.20 1o51A 114 76.30 d.58.5.4 92480 1i52A 236 76.76 c.68.1.13 61767 1h65A 270 79.92 c.37.1.8 65640 1pfkA 320 81.43 c.89.1.1 35575 2oblA 347 82.32 2p65A 187 82.87 2qmoA 220 83.11 1tcaA 317 83.22 c.69.1.17 34726 1wz8A 264 83.71 c.14.1.3 121483 1fnnA 389 84.29 a.4.5.11,c.37.1.20 16129,32426 1kid 203 84.54 2chuA 296 85.68 c.92.2.4 130485 2f7lA 455 85.74