# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qorA 204 8.53e-12 2j41A 207 1.14e-11 1z6gA 218 2.25e-11 1znwA 207 2.49e-11 c.37.1.1 125412 1p5zB 263 5.29e-11 c.37.1.1 87815 2ccjA 205 6.12e-11 2pbrA 195 8.13e-11 4tmkA 213 8.46e-11 c.37.1.1 31930 1z8fA 228 1.06e-10 1kjwA 295 2.51e-09 b.34.2.1,c.37.1.1 68643,68644 2plrA 213 5.24e-09 1gtvA 214 5.75e-09 c.37.1.1 70537 1t0hB 224 3.43e-08 c.37.1.1 106208 2z0hA 197 4.26e-08 1ex7A 186 7.67e-08 c.37.1.1 59537 2vp4A 230 7.83e-08 1t3lA 337 1.46e-07 b.34.2.1,c.37.1.1 106358,106359 1p6xA 334 1.89e-07 c.37.1.1 94195 1ukzA 203 2.06e-07 c.37.1.1 31840 2bwjA 199 2.80e-07 1qhiA 366 2.99e-07 c.37.1.1 31860 1e2kA 331 3.77e-07 c.37.1.1 31854 1zm7A 230 4.97e-07 2axpA 173 6.67e-07 c.37.1.1 127497 2cdnA 201 7.54e-07 c.37.1.1 130289 1s4qA 228 8.78e-07 c.37.1.1 98507 1of1A 376 1.26e-06 c.37.1.1 103924 1ki9A 192 1.33e-06 c.37.1.1 84404 1oe0A 230 1.35e-06 c.37.1.1 92788 1ukz 203 2.54e-06 2c95A 196 3.20e-06 1qhxA 178 5.51e-06 c.37.1.3 31936 1y63A 184 7.02e-06 c.37.1.1 116494 1qf9A 194 1.32e-05 c.37.1.1 31848 1knqA 175 1.33e-05 c.37.1.17 72786 2qgnA 322 1.57e-05 1ckeA 227 2.18e-05 c.37.1.1 31846 3tmkA 216 4.06e-05 c.37.1.1 31920 1uj2A 252 6.97e-05 c.37.1.6 99452 2f6rA 281 8.55e-05 1kdoA 227 0.000106 c.37.1.1 68478 1kgdA 180 0.000110 c.37.1.1 68582 1vhtA 218 0.000118 c.37.1.1 100700 1xrjA 261 0.000152 c.37.1.6 122256 1e4yA 214 0.000184 c.37.1.1,g.41.2.1 31901,45181 1zd8A 227 0.000198 1gky 187 0.000256 3crrA 323 0.000266 1e6cA 173 0.000298 c.37.1.2 59296 1nksA 194 0.000348 c.37.1.1 31886 2ax4A 198 0.000379 3c8uA 208 0.000536 1ltqA 301 0.000832 c.108.1.9,c.37.1.1 78208,78209 2an9A 207 0.000879 c.37.1.1 127037 1ak2A 233 0.001192 c.37.1.1,g.41.2.1 31894,45195 1khtA 192 0.001226 c.37.1.1 84401 1zin 217 0.001381 2eu8A 216 0.001646 2g1kA 176 0.001770 c.37.1.2 134519 2ze7A 253 0.002038 2rgxA 206 0.002117 1jjvA 206 0.002146 c.37.1.1 71698 2iyvA 184 0.002376 c.37.1.2 137812 2rhmA 193 0.002383 1p3jA 217 0.002604 c.37.1.1,g.41.2.1 94022,94023 1n3bA 216 0.002991 c.37.1.1 79959 2bdtA 189 0.003032 c.37.1.25 128344 2ak3A 226 0.003520 c.37.1.1,g.41.2.1 31892,45193 1viaA 175 0.005643 c.37.1.2 100754 1ly1A 181 0.006133 c.37.1.1 74334 1rkbA 173 0.006195 c.37.1.1 111854 1akyA 220 0.006630 c.37.1.1,g.41.2.1 31896,45197 1zinA 217 0.01003 c.37.1.1,g.41.2.1 31915,45178 2yvuA 186 0.01108 3be4A 217 0.01303 1zuhA 168 0.01402 2pezA 179 0.01616 2p67A 341 0.01630 2qt1A 207 0.01926 1s96A 219 0.02125 c.37.1.1 98740 1nn5A 215 0.02196 c.37.1.1 85892 1m7gA 211 0.02258 c.37.1.4 78724 1kagA 173 0.04462 c.37.1.2 72249 1xjcA 169 0.07162 c.37.1.10 115387 2f1rA 171 0.08425 2r44A 331 0.09526 2pt5A 168 0.1436 1esmA 316 0.1787 c.37.1.6 31953 1e9rA 437 0.1846 c.37.1.11 64827 1nijA 318 0.1871 c.37.1.10,d.237.1.1 85741,85742 2ga8A 359 0.1889 1xx6A 191 0.2001 c.37.1.24,g.39.1.14 116139,116140 2eyuA 261 0.2141 1dekA 241 0.2168 c.37.1.1 31842 1sq5A 308 0.2444 c.37.1.6 105882 2orwA 184 0.2575 2grjA 192 0.2746 2hf9A 226 0.3543 2oap1 511 0.3620 1a7jA 290 0.3646 c.37.1.6 31952 1np6A 174 0.4028 c.37.1.10 85954 1nlfA 279 0.4332 c.37.1.11 85850 1htwA 158 0.5725 c.37.1.18 71083 2vhjA 331 0.5818 1in4A 334 0.6041 a.4.5.11,c.37.1.20 62597,62598 2ixeA 271 0.6379 3b9qA 302 0.6903 2k3aA 155 0.7019 1vplA 256 0.7124 c.37.1.12 113966 1x6vA 630 0.7175 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 1zu4A 320 0.7962 1l2tA 235 0.8339 c.37.1.12 73514 2og2A 359 0.8402 1a7j 290 0.8479 2p5tB 253 0.8620 1tq4A 413 0.8860 c.37.1.8 107201 2bbsA 290 0.9029 1z47A 355 0.9271 1pujA 282 0.9473 c.37.1.8 88294 1gvnB 287 0.9499 c.37.1.21 76354 1w44A 331 0.9634 c.37.1.11 114147 2pmkA 243 0.9704 1g8fA 511 0.9850 b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 2pt7A 330 1.112 2qy9A 309 1.142 2cbzA 237 1.171 1vmaA 306 1.222 a.24.13.1,c.37.1.10 108887,108888 2ff7A 247 1.242 c.37.1.12 133377 1njgA 250 1.293 c.37.1.20 85785 1sxjC 340 1.341 a.80.1.1,c.37.1.20 106085,106086 1n2zA 245 1.413 c.92.2.2 79865 1rz3A 201 1.455 c.37.1.6 98132 1r0wA 286 1.559 c.37.1.12 96754 1a5t 334 1.569 1g6hA 257 1.609 c.37.1.12 60318 1sxjA 511 1.635 a.80.1.1,c.37.1.20 106081,106082 1ls1A 295 1.656 a.24.13.1,c.37.1.10 78170,78171 2pzeA 229 1.915 1xmiA 291 1.953 c.37.1.12 115489 1tq6A 413 2.017 c.37.1.8 107202 1oxsC 353 2.035 b.40.6.3,c.37.1.12 87519,87520 1b0uA 262 2.165 c.37.1.12 32370 2pcjA 224 2.208 2gzaA 361 2.211 2d2eA 250 2.266 1oxxK 353 2.298 b.40.6.3,c.37.1.12 93715,93716 1j8mF 297 2.325 a.24.13.1,c.37.1.10 62742,62743 1rj9A 304 2.408 a.24.13.1,c.37.1.10 97553,97554 1mkyA 439 2.431 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1n4aA 252 2.527 c.92.2.2 85317 2it1A 362 2.741 2qi9C 249 2.770 1ye8A 178 2.777 c.37.1.11 123010 2px0A 296 2.880 1a5tA 334 3.073 a.80.1.1,c.37.1.20 18450,32423 1ji0A 240 3.086 c.37.1.12 71665 1g8yA 279 3.086 c.37.1.11 32302 2fh5B 214 3.111 c.37.1.8 133478 1svmA 377 3.135 c.37.1.20 112126 1nsf 273 3.145 1ihuA 589 3.176 c.37.1.10,c.37.1.10 62394,62395 1xbtA 193 3.448 c.37.1.24,g.39.1.14 115080,115081 1gl6A 436 3.492 c.37.1.11 70259 1in6A 334 3.726 a.4.5.11,c.37.1.20 62601,62602 2c9oA 456 4.092 2ihyA 279 4.461 2jrnA 163 4.569 2r2aA 199 4.573 1knxA 312 4.671 c.98.2.1,c.91.1.2 77459,77460 1g6oA 330 4.891 c.37.1.11 32430 2v26A 784 4.992 1yrbA 262 5.228 c.37.1.10 123915 1bifA 469 5.419 c.37.1.7,c.60.1.4 31961,34003 1tueA 212 5.521 c.37.1.20 107323 1n25A 368 5.688 c.37.1.20 85264 2chgA 226 5.695 2bkhA 814 5.801 1sgwA 214 5.973 c.37.1.12 105541 1j8yF 297 6.013 a.24.13.1,c.37.1.10 62747,62748 1t9hA 307 6.882 b.40.4.5,c.37.1.8 112358,112359 1f6bA 198 7.319 c.37.1.8 64986 2gxaA 274 7.538 1g291 372 7.563 1d0yA 761 7.760 b.34.3.1,c.37.1.9 24581,32178 1ewqA 765 8.102 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1w9iA 770 8.174 1w5tA 412 9.99 a.4.5.11,c.37.1.20 114255,114256 1lvk 762 10.03 1u0jA 267 10.10 c.37.1.20 107546 1d2nA 272 10.12 c.37.1.20 32428 2qm8A 337 10.35 2h57A 190 10.77 1xewX 182 10.94 c.37.1.12 115235 1lw7A 365 10.94 c.26.1.3,c.37.1.1 74295,74296 1qhlA 227 11.49 c.37.1.12 32382 1sxjE 354 11.63 a.80.1.1,c.37.1.20 106089,106090 1us8A 147 12.09 c.37.1.12 99859 1jx2B 315 12.17 c.37.1.8 67404 3b9pA 297 12.19 2h17A 181 12.23 2cvhA 220 12.31 2r6fA 972 12.40 2akaA 776 12.42 1mvwA 840 12.99 i.15.1.1 79523 1w7jA 795 13.55 b.34.3.1,c.37.1.9 120688,120689 2akaB 299 14.15 c.37.1.8 126914 1lv7A 257 15.04 c.37.1.20 78232 1d6jA 211 15.77 c.37.1.4 31940 1g3qA 237 16.05 c.37.1.10 60237 2gdjA 264 16.19 c.37.1.11 135018 3cox 507 16.36 2a5yB 549 17.54 2qm0A 275 18.77 2yv5A 302 18.90 2pjzA 263 19.29 1qopA 268 19.46 c.1.2.4 28570 1cp2A 269 20.80 c.37.1.10 32269 2dr3A 247 22.82 1ko7A 314 23.03 c.98.2.1,c.91.1.2 72797,72798 1bif 469 23.91 1b5tA 275 25.26 c.1.23.1 29676 1tca 317 25.41 1cr1A 296 26.14 c.37.1.11 32286 2j4dA 525 28.60 2q8pA 260 28.65 3bosA 242 28.71 1mwmA 320 29.55 c.55.1.1,c.55.1.1 79580,79581 1efdN 266 31.29 c.92.2.1 35597 7a3hA 303 31.47 c.1.8.3 28817 1wywA 230 31.64 1wcv1 257 31.92 1f2tA 149 32.33 c.37.1.12 32373 2nq2C 253 33.75 1ycdA 243 35.42 3bs4A 260 36.23 2jdiD 482 38.22 a.69.1.1,b.49.1.1,c.37.1.11 138263,138264,138265 1g55A 343 38.33 c.66.1.26 34247 2iutA 574 39.03 2bonA 332 40.82 1xwiA 322 40.98 2b8wA 328 41.42 1ofuA 320 42.33 c.32.1.1,d.79.2.1 86972,86973 1kidA 203 43.40 c.8.5.1 30771 1pfkA 320 44.66 c.89.1.1 35575 2z83A 459 44.76 1i4nA 251 44.94 c.1.2.4 71114 2a9iA 113 47.15 1yqtA 538 47.59 2oblA 347 47.72 1wz8A 264 47.99 c.14.1.3 121483 2r7aA 256 48.54 2cxxA 190 49.57 c.37.1.8 131013 1gt6A 269 50.32 c.69.1.17 76342 1ax4A 467 50.86 c.67.1.2 34391 1i52A 236 50.90 c.68.1.13 61767 2qgzA 308 51.01 1zxxA 319 51.50 2fnaA 357 54.24 a.4.5.11,c.37.1.20 133809,133810 2qmoA 220 54.65 1e79D 482 54.92 a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 1jbkA 195 55.26 c.37.1.20 71631 1w36D 608 56.18 c.37.1.19,c.37.1.19 114128,114129 1h65A 270 57.61 c.37.1.8 65640 2hhjA 267 58.00 c.60.1.1 136497 1kid 203 58.48 1srvA 145 58.63 c.8.5.1 30817 2f7lA 455 62.54 2f5xA 312 62.81 2hjgA 436 63.71 1tcaA 317 65.20 c.69.1.17 34726 2rebA 352 66.31 c.37.1.11,d.48.1.1 32282,38767 2z1aA 552 66.73 2pmbA 462 68.80 2g6bA 180 70.69 c.37.1.8 134701 2phzA 311 71.20 2p65A 187 75.65 1fj2A 232 76.63 c.69.1.14 34720 2higA 487 77.43 1fnnA 389 79.32 a.4.5.11,c.37.1.20 16129,32426 3c5cA 187 79.32 3co4A 312 79.46 1quuA 250 79.89 a.7.1.1,a.7.1.1 16320,16321 1tuoA 464 82.05 1tib 269 82.77 1i6lA 328 83.13 c.26.1.1 66041 1odfA 290 83.63 c.37.1.6 92782 1e3mA 800 85.84 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19075,32389,33746,39747 3bdvA 191 85.99 1vcoA 550 86.13 c.23.16.1,c.37.1.10 108508,108509 1gmlA 178 89.93 c.8.5.2 70273